PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 251aa MW: 26934.4 Da PI: 10.3523 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66.5 | 9.2e-21 | 16 | 96 | 27 | 113 |
TCP 27 ecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlake 113 ++ r+ +Lq++LG+++d++tieWLlqqa+p+++++tgt++++a+++ ++ s +ss+s+ sa +sk++++s + al+la++ Pbr018420.1 16 QTGLRLWELQRKLGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFStSNISLRSSGSS-------LSASPSKSAPHSFHGALALAHH 96 5667899*************************************999666666666552.......2222444444444444555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 13.235 | 1 | 51 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.7E-21 | 16 | 88 | IPR005333 | Transcription factor, TCP |
Pfam | PF01778 | 1.2E-18 | 180 | 245 | IPR029004 | Ribosomal L28e/Mak16 |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAPLLLFRWG ERALLQTGLR LWELQRKLGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN 60 FSTSNISLRS SGSSLSASPS KSAPHSFHGA LALAHHPHYD EGFAHSGLMG FHQSPSPPPV 120 TISTASQFTL PHNSLHFCSA HPPYHSTHPS PLDKPTEPPS LSPSANQRNP GAMTTVPGQL 180 IWKIVKKNNS FLVKEFGRGN AGVRFSKEPN NLYNLHSYKH SGLANKKTVS IQAGGKDQSV 240 VLATTATRSC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_Cr | 6e-32 | 173 | 248 | 1 | 77 | 60S ribosomal protein L28E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018420.1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-20 | TCP family protein |