PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 271aa    MW: 29762.7 Da    PI: 8.2979
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018380.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-392282262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  Pbr018380.1 22 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 82
                 6899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-241774IPR003851Zinc finger, Dof-type
PfamPF027011.0E-332480IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0962680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDHDMGSNG CTRSVLEKRA RPQEQLNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW  60
TEGGTLRNVP VGGGSRKNKK STSSSVSSKI TIPDLNPPTT LSHFSSSHQN PRVTHEGQDL  120
NLGFNAIDAH YHGTTMENNN STNSSSAPNL SAMELLRTGI ASRGVNSYMP TQNMPDHHSN  180
TLYPPSSAGF SLQEYKPTNL GFCVDGLGNR YGGDDHENVN GGRILFPFGD HHLKQISSTA  240
GHHEVLDHHQ NKGQGNPTGY WNGLLGGGSW *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018380.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368732e-50BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBankBT1443332e-50BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375423.10.0PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
SwissprotQ433855e-62DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A498KRK80.0A0A498KRK8_MALDO; Uncharacterized protein
STRINGXP_009375422.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.32e-57Dof family protein