PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 271aa MW: 29762.7 Da PI: 8.2979 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.2e-39 | 22 | 82 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+ Pbr018380.1 22 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 82 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 17 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 24 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEDHDMGSNG CTRSVLEKRA RPQEQLNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGTLRNVP VGGGSRKNKK STSSSVSSKI TIPDLNPPTT LSHFSSSHQN PRVTHEGQDL 120 NLGFNAIDAH YHGTTMENNN STNSSSAPNL SAMELLRTGI ASRGVNSYMP TQNMPDHHSN 180 TLYPPSSAGF SLQEYKPTNL GFCVDGLGNR YGGDDHENVN GGRILFPFGD HHLKQISSTA 240 GHHEVLDHHQ NKGQGNPTGY WNGLLGGGSW * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018380.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136873 | 2e-50 | BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA. | |||
GenBank | BT144333 | 2e-50 | BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375423.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X2 | ||||
Swissprot | Q43385 | 5e-62 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A498KRK8 | 0.0 | A0A498KRK8_MALDO; Uncharacterized protein | ||||
STRING | XP_009375422.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 2e-57 | Dof family protein |