PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018355.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 371aa    MW: 41779.7 Da    PI: 5.5318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018355.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63e-1577176196
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+l +sdv ++gr+v+pk+ ae+h     +ke++  l l d    ++W+v+++++ + ++ +++ + +++F +a+gL +gD++++  d+ + ++++
  Pbr018355.1  77 FQKKLQNSDVKANGRIVVPKREAESHfpvLASKERGLWLHLDDmDYMQVWTVRFRFWPNERSrMYILDHTRSFIQAHGLGAGDTITLFKDD-RLGSYL 173
                  99***************************445678889999996666*******995555555555559****************976333.445455 PP

                  EEE CS
           B3  94 vkv 96 
                  +++
  Pbr018355.1 174 IRA 176
                  555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2369176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-1775173IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-2075178No hitNo description
PROSITE profilePS508639.89777180IPR003340B3 DNA binding domain
SMARTSM010192.7E-1277180IPR003340B3 DNA binding domain
PfamPF023629.3E-1277165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAGVHEKNNV AASAAEDNLA GSSRSSGPLR SENSYRRNPR DEPLVHEPAA RQPPVLTCPP  60
PTPDPRLFNP QQMRFLFQKK LQNSDVKANG RIVVPKREAE SHFPVLASKE RGLWLHLDDM  120
DYMQVWTVRF RFWPNERSRM YILDHTRSFI QAHGLGAGDT ITLFKDDRLG SYLIRARRDA  180
MRLLAHPTTH NPVQLPQRLP CDPLQDFGVN LFVVPRVLEY NHQTIENIAV NIGVMDASPS  240
TNNQVNVQAE EDQRTTVHEH NNVEVAVAPV VEDHQTTVNE NNDVGTAVVT EDHQTMMINV  300
NNYVSDNVNV ANEMVFPSLD DHSSFKLPSL SPLFGSDTSR SSYELGNPID DFWDVGMGQM  360
DFDFNFSSPK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-31731781105B3 domain-containing transcription factor FUS3
6j9b_D8e-31731781105B3 domain-containing transcription factor FUS3
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018355.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IAK40.0A0A498IAK4_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-33B3 family protein