PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 19921.8 Da PI: 8.4913 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.6e-10 | 37 | 85 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + ++ Ka iL + ++Y++ Lq Pbr018354.1 37 NSHSLAERARREKISMSMKLLQSLVPGC----DQITGKARILDEIIKYVQLLQ 85 58*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-16 | 32 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.44E-9 | 32 | 89 | No hit | No description |
PROSITE profile | PS50888 | 14.437 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 35 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 37 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-7 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNKNRANKQS KVAAADKAVQ FQRDGVRVKA RRGQATNSHS LAERARREKI SMSMKLLQSL 60 VPGCDQITGK ARILDEIIKY VQLLQNQVEC LTAQLASVDL MLYFCELNQS ANPSASERLC 120 CLEPQFSSVL EPSPTQFGSL VDVTPTSASI LLTEEQKASL IHQAIWEKKE NSEMGNRLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018354.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378817.1 | 1e-131 | PREDICTED: transcription factor bHLH137-like | ||||
Swissprot | Q9SRT2 | 2e-30 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A498I9X1 | 1e-100 | A0A498I9X1_MALDO; Uncharacterized protein | ||||
STRING | XP_009378817.1 | 1e-130 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17860 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 9e-33 | bHLH family protein |
Publications ? help Back to Top | |||
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