PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017710.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 425aa MW: 46213.7 Da PI: 8.9339

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017710.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	48.2	2.8e-15	97	136	2	41
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqr 41 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g + r Pbr017710.1 97 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGSMLR 136 **********************************997655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-16	90	136	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	16.785	94	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-14	95	135	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-10	97	136	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDWNLKAASW DLPELEQGTF SNLDTTVDGS SSFGDHRTFK GSNFSVDLKL GQLGGPGNNE 60 LVGMLKEPGG PKTTSSSPSG SLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE 120 LHSKTPQVTI NGSMLRRNLX XXXXXXXXXX XXXXXXXXXX XXXXXXGRKR LEGHNRRRRK 180 PQPEPLSHPG SFLSNYQGTQ LLPFSSSLVY PSTNVINPAW AGIVKTEPDS GVHNLQLPLI 240 DKQNMFLGSS GSTSSSGYKG GKQFSLFQSS NSSPLHHNHQ TSHHHGTSVC QPLLNNISFS 300 ETASGGGGTT KSKMFCDRLT TQIHDSDCAL SLLSSPQTQQ TSEIGLRHTV QQPNSISLMQ 360 QRLGPNGLRG NNSAMEPMDS VLVSNGSGDA NVHCPGMFRL ISDGSQGNGN QHHQSPQTLP 420 FHWQ*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDWNLKAASW DLPELEQGTF SNLDTTVDGS SSFGDHRTFK GSNFSVDLKL GQLGGPGNNE  60
LVGMLKEPGG PKTTSSSPSG SLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE  120
LHSKTPQVTI NGSMLRRNLX XXXXXXXXXX XXXXXXXXXX XXXXXXGRKR LEGHNRRRRK  180
PQPEPLSHPG SFLSNYQGTQ LLPFSSSLVY PSTNVINPAW AGIVKTEPDS GVHNLQLPLI  240
DKQNMFLGSS GSTSSSGYKG GKQFSLFQSS NSSPLHHNHQ TSHHHGTSVC QPLLNNISFS  300
ETASGGGGTT KSKMFCDRLT TQIHDSDCAL SLLSSPQTQQ TSEIGLRHTV QQPNSISLMQ  360
QRLGPNGLRG NNSAMEPMDS VLVSNGSGDA NVHCPGMFRL ISDGSQGNGN QHHQSPQTLP  420
FHWQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017710.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375190.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBL	A0A2R4QL79	0.0	A0A2R4QL79_9ROSA; SPL domain class transcription factor 2
TrEMBL	D9ZJC1	0.0	D9ZJC1_MALDO; SPL domain class transcription factor
STRING	XP_009375190.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2591	33	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-44	SBP family protein