PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017688.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 353aa MW: 37763.8 Da PI: 9.3741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017688.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	85	145	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Pbr017688.1 85 PEQALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 145 5799******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	69	142	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	87	143	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	89	143	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	91	127	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MVFSSIPAYL DPANWQQQPN HHHHLTGSNT NNISNNNINN NSHFLPPPPP PLPSNPHDGC 60 GVGGAGSIRP GSMADRARMA NIPLPEQALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR 120 RYWTRGGALR NVPVGGGCRR NKRSKGTSSS ASKSPASSSD RPTGSAGSSG HSNLGLNNSS 180 TAGSADNNNM RMSPQIPPLR FMSPFATDMA LNFGMMNNNN SSNYGVGDLN GFHQMGSGLG 240 ASGGSLFNFQ QQTPSFPFMA GLDPTPAGLM FETSGVEVPG YNQVRPRAPS AGMSISQMAS 300 VKMELESQQQ QQQQQQNQEL NLSRQLLGMN NNSGNDQFWS NGGGGCRGSC WG*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MVFSSIPAYL DPANWQQQPN HHHHLTGSNT NNISNNNINN NSHFLPPPPP PLPSNPHDGC  60
GVGGAGSIRP GSMADRARMA NIPLPEQALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR  120
RYWTRGGALR NVPVGGGCRR NKRSKGTSSS ASKSPASSSD RPTGSAGSSG HSNLGLNNSS  180
TAGSADNNNM RMSPQIPPLR FMSPFATDMA LNFGMMNNNN SSNYGVGDLN GFHQMGSGLG  240
ASGGSLFNFQ QQTPSFPFMA GLDPTPAGLM FETSGVEVPG YNQVRPRAPS AGMSISQMAS  300
VKMELESQQQ QQQQQQNQEL NLSRQLLGMN NNSGNDQFWS NGGGGCRGSC WG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017688.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374687.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Swissprot	O80928	4e-57	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A498IGA8	1e-179	A0A498IGA8_MALDO; Uncharacterized protein
STRING	XP_009374687.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	5e-52	DNA binding with one finger 2.4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]