PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr017591.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 240aa MW: 27633.3 Da PI: 8.4717 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.9 | 3.6e-25 | 126 | 211 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi+ r e+++ +g ++ Wee+s km+e+g+ rs +C+ekwen+nk+++++ +++kr + + + cpyf++le Pbr017591.2 126 RWPEAEVQALITQRAAFEHKFCvAGTPRGRIWEEISVKMHETGYVRSGRKCREKWENINKYFRRCMGSDNKR-PANAKLCPYFHELE 211 8********************955899*******************************************98.88889*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-18 | 125 | 211 | No hit | No description |
CDD | cd12203 | 2.48E-18 | 125 | 190 | No hit | No description |
PROSITE profile | PS50090 | 6.586 | 126 | 184 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEQQEQMHKQ LMEMVEKKEE RLAREEAWKQ QELDRLKRDK EIRAQETSRN LALISFIQNY 60 LGYEIQVPQP SAATAPEQAP APTAAPILIS VVPKYDHQRV EGNGKADNGM QRDLMLVSSC 120 DATDRRWPEA EVQALITQRA AFEHKFCVAG TPRGRIWEEI SVKMHETGYV RSGRKCREKW 180 ENINKYFRRC MGSDNKRPAN AKLCPYFHEL ELLHKSALAS FGNGFNRTSN QNEANIEKQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr017591.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374902.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 | ||||
TrEMBL | A0A498JZQ9 | 1e-124 | A0A498JZQ9_MALDO; Uncharacterized protein | ||||
STRING | XP_009374902.1 | 1e-180 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 1e-34 | Trihelix family protein |