PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017565.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 315aa MW: 33971.4 Da PI: 6.9962

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017565.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.4e-33	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGGs kAtPk+i+++m+vkgLtl h+kSHLQkYRl Pbr017565.1 40 KPRLRWTADLHERFVDAVTQLGGSSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-32	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.499	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	1.77E-16	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-15	138	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MFPGLMHEGG GMVGGEDMQM QGHSHRGGGD PCLVLTSDPK PRLRWTADLH ERFVDAVTQL 60 GGSSKATPKA IMRTMNVKGL TLFHLKSHLQ KYRLGKQSGK DMTDISKDGL SASYLLESPG 120 TGNSSPNLPT SDLNEGYEVK EALRAQMEVQ SKLHVQVEAE KHLQIRQDAE RRYMAMLERA 180 CKMLADQFIG GSVTDTDSHK CHGSGNKNAK GSSIDMLGFY TLQSTDVVGV HGPDEELPIS 240 IHTQRADCST ESCLTSHESP GGLTLEGSPG GGKKRMLSLD TGNGSLVWGE AKVRTQEINI 300 APIDPPRGIA RYGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017565.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT893405	0.0	KT893405.1 Prunus persica cultivar Jinliuzaohong Myb family transcription factor APL (APL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374802.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X1
Swissprot	Q94A57	2e-63	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A498IQY5	0.0	A0A498IQY5_MALDO; Uncharacterized protein
STRING	XP_009374802.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-66	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]