PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017402.6
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 882aa    MW: 98797.6 Da    PI: 8.1673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017402.6genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-14361131799
                  E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p  f+++  g++     +  l+ +sg++  v+l  + + ++ ++ ++GW++Fvk++ L++gDf+vF++ g+s+f  +vk+++k
  Pbr017402.6  36 RIPHAFLKNLsGLS--L-GKCALKGPSGKRLIVEL--EERENGlFFYAAGWQDFVKDHLLQVGDFLVFYYYGESKF--KVKIYDK 113
                  79999997665433..2.3799*************..777777788899*********************999999..9999987 PP
2B355.51.1e-172102931298
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +  ++v+pkk a + g+ + +  t++l++esgrsW  k+i r ks+   + lt+GW eF++an++ +gD+v+F+++++s     ++vfr
  Pbr017402.6 210 E-YCVVIPKKLAISEGLLSMG--TVMLRNESGRSWCAKVILRPKSSFhrMELTTGWAEFCNANQISVGDTVIFEFVKQSVI--QIHVFR 293
                  3.349*******999888555..8*****************999988667889*********************9875554..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-167116IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-1511112No hitNo description
SMARTSM010191.5E-612114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.46220114IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1633116IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1136113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-18194293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-19194294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.042198295IPR003340B3 DNA binding domain
CDDcd100171.64E-14199293No hitNo description
SMARTSM010192.4E-11201295IPR003340B3 DNA binding domain
PfamPF023627.3E-15211294IPR003340B3 DNA binding domain
SuperFamilySSF565747.54E-85445667IPR023796Serpin domain
PfamPF000799.4E-78451832IPR023796Serpin domain
Gene3DG3DSA:3.30.497.102.0E-59452616No hitNo description
SMARTSM000933.5E-63457878IPR023796Serpin domain
Gene3DG3DSA:2.30.39.104.1E-28617746No hitNo description
SuperFamilySSF565747.54E-85697832IPR023796Serpin domain
Gene3DG3DSA:3.30.497.102.0E-59747800No hitNo description
Gene3DG3DSA:2.30.39.104.1E-28801832No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MARKGPRKKQ SFFKVLLGDF SKHLYGLLRS CQILQRIPHA FLKNLSGLSL GKCALKGPSG  60
KRLIVELEER ENGLFFYAAG WQDFVKDHLL QVGDFLVFYY YGESKFKVKI YDKSACEKDV  120
EEADGKSGNP VSLENYKGNQ ARVKEEIVES EAENYDTDCE NKATIANRRS GNAMSGKRPA  180
TGYVKETSTT CFTFKSENPC FMETLKKHQE YCVVIPKKLA ISEGLLSMGT VMLRNESGRS  240
WCAKVILRPK SSFHRMELTT GWAEFCNANQ ISVGDTVIFE FVKQSVIQIH VFRAVRGKRC  300
AVLNYTTLST FNSETYRAPA ASDNVRISIF VVPLQNVLIP LQNIFVPLQN GVVDPRRWEA  360
IVNPSLLHTP DPGYSIWLHI IVSNSAQQQR TLSFRQPLSL QPAGAYALRS PFSTHQEPTP  420
FRCSSQMAAI APLFFTLPGC DIQSTKETIS NVNDVSLEIT KQLLTTEGKE KNMVYSPLSI  480
QVVLWLLTAG SKGPTREQLL AFLRSKSTDQ LNSLASHLVP LIFTEGSTKG GPCLSFANGL  540
WVKDTIPIKP SFKEVVDTAY KAAIKHVSFV NPEEVRREVN LWAEKATKGL ITEALSPGLI  600
DHTTTLIFSN ALYFKGLWSR KFDASITITD NFHLLNGTSV KAPFMRSSGE HFVRAFDGFK  660
VLRLPYSQGE DKERQFSMYL LPPDETFGRL ALGEDKERQF SMYLLLPDEK YGLPALVERV  720
CSEPGFLDRH QPGRRVPVGD FKIPRFKITS GFTASEILMD LGLVLPFNGD GDLTEMLESG  780
IGEAKMIHKS FIEVDEEGTK AAAASVFHTL MCSTGPVERI EDIDFVADHP FLXXXXXXXX  840
XXXXXXXXXX XXXXXXFLLL IREETTGTVM FIGHVLNPLK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3le2_A1e-1164398792392Serpin-ZX
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017402.6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503046.10.0PREDICTED: serpin-ZX-like
STRINGXP_009356868.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3829422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-15B3 family protein