PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017379.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 670aa    MW: 74297.2 Da    PI: 4.8996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017379.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14440486455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Pbr017379.1 440 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 486
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-5511194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-18438502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11440485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-19440503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.94E-16440490No hitNo description
SMARTSM003538.8E-18442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAAPPPSSSR LRGMLQASVQ YVQWTYSLFW QICPQQGILV WSDGYYNGAI KTRKTVQPME  60
VSAEEASLQR SQQLRELYDS LSAGETNQPP ARRPCASLSP EDLTESEWFY LMCVSFSFPP  120
GVGLPGKAYA RRQHVWLTGA NEVDSKTFSR AILAKSARIQ TVVCIPLLDG VVEFGTTERV  180
PEDHALVEHV KTFFVDHHHP PPPKPALSEH STSNPATSSD HPHFHSPHLL QTMCTNPPLN  240
AAQEDEEDEE EDDNQEEDDG GDESDSEAET GRNGGAVVPA ANPPQVLAAV AEPSELMQLE  300
MSEDIRLGSP DDASNNLDSD FHLLAVRPLT LEELTHDDDT HYSETVSTIL QGQATRWTDS  360
SSTNYTACLT QSAFAKWSSR VDHHFLMPVE GTSQWLLKYI LFSVPFLHSK YRDENSPKSQ  420
EGEGSTRLRK GTPQDELSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE  480
YVKQLRNKIQ DLEARNMLME EDQRSRSSGE MQRSSSCKEL RSGLTVVERT QGGPPGSDKR  540
KLRIVEGSGG VAIGKAKVME DSPPPPPPPP PQPEPSPTPM VTGTSLEVSI IESDGLLELQ  600
CPYREGLLLD VMQTLRELRI ETTVVQSSLN NGFFVAELRA KVKDNVSGKK VSITEVKRVI  660
NQIIPQSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-211019412192Transcription factor MYC3
4rqw_B4e-211019412192Transcription factor MYC3
4rru_A7e-211019051227Transcription factor MYC3
4rs9_A4e-211019412192Transcription factor MYC3
4ywc_A7e-211019051227Transcription factor MYC3
4ywc_B7e-211019051227Transcription factor MYC3
4yz6_A4e-211019412192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449ERRRRE
2445450RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017379.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4039600.0JX403960.1 Pyrus communis BHLH domain class transcription factor (bHLH) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503056.10.0PREDICTED: LOW QUALITY PROTEIN: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLR9R8650.0R9R865_PYRCO; BHLH domain class transcription factor
STRINGXP_009356769.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]