PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017325.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 462aa    MW: 52481.4 Da    PI: 6.7004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017325.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.82.2e-114604601373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaal.............. 81 
                  l++lL++cAe +s+ d+  a++l++ ls ++sp gd+++Rl+++f++AL  rl+     ++++   l++ +++ + s+++                  
  Pbr017325.1  60 LRHLLITCAELISHLDFPSAHRLISLLSSNSSPFGDSTERLTHHFVKALCFRLNInpnYSPTTIGPLTALTNAASASASS---Ssnylflpvlqeeed 154
                  68**************************************************9862122333333333333332223333...135589999999999 PP

         GRAS  82 ..........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetge 163
                             ++++++P+++fshltaNqaIlea++ +   +Hi+Dfdi++G+QWp+L+qaL +R+     ++pp+lRiT+ g+    + + l +tge
  Pbr017325.1 155 nneealhscyLTLNQITPFIRFSHLTANQAILEAIDAShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGE 248
                  999999886556************************996789************************87777779**********....9********* PP

         GRAS 164 rLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                  rL +fA++lg+ f+f++l    +++  + +++++L ++++E+laVn+vl lh+l+ ++         +L+ +ksl+Pkv++++++ea+hn++ F++rf
  Pbr017325.1 249 RLLRFAQSLGLAFQFHPLvlnnTSQPSDLISPSTLGLHQNEVLAVNCVLYLHTLVTDDSRD---LFLFLQKIKSLNPKVFTIANKEANHNNHLFFNRF 343
                  ******************555444456778************************9444433...4589****************************** PP

         GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                  +eal++y a+fdslea+lp++s+er +vE+  +grei++vv  eg++r++rhe++e+ W+  l++aGF++vpls +a +qaklllr ++ s+gy++  
  Pbr017325.1 344 VEALDHYGAVFDSLEATLPPNSRERLVVEEW-FGREIKDVVGIEGEKRKQRHESYETfWEVVLRRAGFENVPLSPFALSQAKLLLRLHYpSEGYQLRI 440
                  *****************************97.**********************9977**************************************** PP

         GRAS 354 esgslvlgWkdrpLvsvSaW 373
                   ++s++lgW++rpL+svS+W
  Pbr017325.1 441 FNDSFFLGWQNRPLFSVSSW 460
                  ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.23334440IPR005202Transcription factor GRAS
PfamPF035147.5E-11260460IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGSFNSSHIQ QQQQEDHLNH PNNNNISDLQ LYHHHLHHHH ISDQPPLIMS TSPSISPTHL  60
RHLLITCAEL ISHLDFPSAH RLISLLSSNS SPFGDSTERL THHFVKALCF RLNINPNYSP  120
TTIGPLTALT NAASASASSS SNYLFLPVLQ EEEDNNEEAL HSCYLTLNQI TPFIRFSHLT  180
ANQAILEAID ASHLSIHILD FDIMHGVQWP PLMQALVERS YNSPLHPPPT LRITATGRDL  240
TLLLRTGERL LRFAQSLGLA FQFHPLVLNN TSQPSDLISP STLGLHQNEV LAVNCVLYLH  300
TLVTDDSRDL FLFLQKIKSL NPKVFTIANK EANHNNHLFF NRFVEALDHY GAVFDSLEAT  360
LPPNSRERLV VEEWFGREIK DVVGIEGEKR KQRHESYETF WEVVLRRAGF ENVPLSPFAL  420
SQAKLLLRLH YPSEGYQLRI FNDSFFLGWQ NRPLFSVSSW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-56644618375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017325.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3079590.0KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374432.20.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A498INV50.0A0A498INV5_MALDO; Uncharacterized protein
STRINGXP_009374432.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-120GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]