PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017262.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 350aa    MW: 36438.9 Da    PI: 5.4634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017262.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.86.7e-25257319163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++el +l++e++kl+se+
  Pbr017262.1 257 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVEALSNENHSLREELHRLSEECEKLTSEN 319
                  89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.5E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-11116230No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-21251317No hitNo description
SMARTSM003389.7E-23257321IPR004827Basic-leucine zipper domain
PfamPF001702.8E-22257319IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.495259322IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12260316No hitNo description
CDDcd147022.23E-26262312No hitNo description
PROSITE patternPS000360264279IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGTGEEGTPS KPSKQASTPQ ELPTTPSYPD WSSSMQAYYG PGGTPPPFFA STVASSTPHP  60
YMWGAQHPMM PPYGTPVPYP AMYPPGGVYA HPSMVMTPGA PQPTPELEGK GPDGKERAST  120
KKPKGTAGTA CLAGGKVVES GKATSGSGND GASQSGESGS EGSSDGSDDN ANNQEYGANK  180
KGSFDKMLAD GANAQNSTGT LVQASVPGKP VSMPGTNLNI GMDLWNASSA GAGAAKVRGN  240
PSGPPSAGGA EHWIQDEREL KRQKRKQSNR ESARRSRLRK QAECEELQAR VEALSNENHS  300
LREELHRLSE ECEKLTSENA NIKEELTQVC GPDLVANLEQ QPGGGEGNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279RRSRLRK
2273280RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017262.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374235.10.0PREDICTED: G-box-binding factor 1 isoform X1
RefseqXP_018506909.10.0PREDICTED: G-box-binding factor 1 isoform X1
RefseqXP_018506910.10.0PREDICTED: G-box-binding factor 1 isoform X1
SwissprotP427741e-121GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A498HWJ70.0A0A498HWJ7_MALDO; Uncharacterized protein
STRINGXP_009374235.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-96G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]