PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017150.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 749aa MW: 81597.5 Da PI: 6.0768

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017150.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	318.1	1.9e-97	389	747	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++L+++Ae +++g+ laq +Larl+++ sp g+p+ R+a+yf+eAL+ l+ + ++ ++s+ s+ + + ++ a+k fse+sP+++f+++t+N Pbr017150.1 389 IDQLFNAAELIETGNPVLAQGILARLNHQLSPIGKPFSRAAFYFKEALQLLLHI-NT---SSNSSSAFSPFSLIFKIGAYKSFSEISPVVQFANFTCN 482 689*********************************************9998.22...2334444555559********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g+ sl+iT++ s++++++ e++ t+e+L++fA+el++ fe +++ ++l+ + L ++ Pbr017150.1 483 QAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNGGASSLKITAFISSSAHDEFEVSFTRENLKHFASELNLAFELELVSLESLN-SGSWGLPIH 579 ***********************************************99*************************97444444.447889888 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + +aV + l + ++ ++++ l+ +L++vk+lsP++vv ++ +d+++ +F +++++al+ ys l++s++a + ++ +k+Er ll++ i+ Pbr017150.1 580 ASDGVAVAVNLPIGSFSSNPLLLPL----ILRFVKQLSPRIVVSLDRGSDRTDVPFPHQIIQALHSYSGLLESIDAV-NVNPDALQKIERYLLQPGIE 672 8777777777777788766666666....*****************************************665.34668999******** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++v+ ++ + ++ +Wr + ++GF+p+++s+++++qa++l++++++ g++ve+++ slvl+W+++ L+s+SaWr Pbr017150.1 673 KIVTGRHHS----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHVEKRQSSLVLCWQRKDLISASAWR 747 999888....99999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.925	362	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-95	389	747	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MKAMPLPFEE FQGKGVLDFS SVSSSSAAAA ASDSFLSSPP QKWVHRHHSS KENCYVGSTE 60 PTSVLDTRRS PSPPTSSSTL SSSHGSGASG GSTDTTTAAG VENPSQTPLE EQKCGPSLGM 120 EDWESVLSES PGQEQSILRL IMSDIEDPSL GLNTLLQSSS GSDHHHQNLE FGCGGFQDVV 180 DQGGGYGGGF EADDHSGVLV SPSLHASSDP DFNFSNNASN VETQSSNVRP NPTMFSASMS 240 NPFPVSLSSG MFQRQQNMGL EEKPQIFNPQ MVINQNQAQS TQNPAMFMPL TYAQLQEHHL 300 LSPPPSKRLN SGGFGPGYPV QRVPFLNPGQ ELLVRAQQQQ QQLQFLPQHL QQQRPTMPVA 360 KEKMMSPAEG GKEMMNQNHQ QQQLQQAVID QLFNAAELIE TGNPVLAQGI LARLNHQLSP 420 IGKPFSRAAF YFKEALQLLL HINTSSNSSS AFSPFSLIFK IGAYKSFSEI SPVVQFANFT 480 CNQAILEAVE GFNRVHVIDF DIGYGGQWAS FMQEVALRNG GASSLKITAF ISSSAHDEFE 540 VSFTRENLKH FASELNLAFE LELVSLESLN SGSWGLPIHA SDGVAVAVNL PIGSFSSNPL 600 LLPLILRFVK QLSPRIVVSL DRGSDRTDVP FPHQIIQALH SYSGLLESID AVNVNPDALQ 660 KIERYLLQPG IEKIVTGRHH SPKRTPSWRT LFLSSGFSPL TFSNFTESQA ECLVQRTPVG 720 GFHVEKRQSS LVLCWQRKDL ISASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MKAMPLPFEE FQGKGVLDFS SVSSSSAAAA ASDSFLSSPP QKWVHRHHSS KENCYVGSTE  60
PTSVLDTRRS PSPPTSSSTL SSSHGSGASG GSTDTTTAAG VENPSQTPLE EQKCGPSLGM  120
EDWESVLSES PGQEQSILRL IMSDIEDPSL GLNTLLQSSS GSDHHHQNLE FGCGGFQDVV  180
DQGGGYGGGF EADDHSGVLV SPSLHASSDP DFNFSNNASN VETQSSNVRP NPTMFSASMS  240
NPFPVSLSSG MFQRQQNMGL EEKPQIFNPQ MVINQNQAQS TQNPAMFMPL TYAQLQEHHL  300
LSPPPSKRLN SGGFGPGYPV QRVPFLNPGQ ELLVRAQQQQ QQLQFLPQHL QQQRPTMPVA  360
KEKMMSPAEG GKEMMNQNHQ QQQLQQAVID QLFNAAELIE TGNPVLAQGI LARLNHQLSP  420
IGKPFSRAAF YFKEALQLLL HINTSSNSSS AFSPFSLIFK IGAYKSFSEI SPVVQFANFT  480
CNQAILEAVE GFNRVHVIDF DIGYGGQWAS FMQEVALRNG GASSLKITAF ISSSAHDEFE  540
VSFTRENLKH FASELNLAFE LELVSLESLN SGSWGLPIHA SDGVAVAVNL PIGSFSSNPL  600
LLPLILRFVK QLSPRIVVSL DRGSDRTDVP FPHQIIQALH SYSGLLESID AVNVNPDALQ  660
KIERYLLQPG IEKIVTGRHH SPKRTPSWRT LFLSSGFSPL TFSNFTESQA ECLVQRTPVG  720
GFHVEKRQSS LVLCWQRKDL ISASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	403	747	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374164.1	0.0	PREDICTED: scarecrow-like protein 27
TrEMBL	A0A498KF99	0.0	A0A498KF99_MALDO; Uncharacterized protein
STRING	XP_009374164.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-133	GRAS family protein