PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017127.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 324aa    MW: 36518.2 Da    PI: 4.9952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017127.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14125176155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+++P +   + ++ + a+i   A++Y+k+L+
  Pbr017127.1 125 QRMTHIAVERNRRKQMNEYLSVLRSIMPDS---YVQRGDQASIIGGAINYVKELE 176
                  79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.49E-14123180No hitNo description
PROSITE profilePS5088815.612124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17124195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVFPQ DPFSYTTNKD LYNLLGGNLS YVDDQQQASL DFLDYQTDQN YPNYGSTYSS  60
PPSMVPHFNE LHLSNPNPVA STTNPTGDQP EFQLPLEDTI NMSRSSRVKR RRAKSKKNEE  120
EIENQRMTHI AVERNRRKQM NEYLSVLRSI MPDSYVQRGD QASIIGGAIN YVKELEQEVQ  180
FLGVQKANDR APFSEFFTFP QYSSRSSTSD HEPAVAAMAE LPLLECRSSK IAADIEVTMV  240
ESHASLKVRS KKVPKQLLKI VSGLHDMHLT ILHLNVVTVD DIVLYSLSLK VEDECMLTSV  300
DEIATAVHEM LARIQEEAML NLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373972.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A498IJQ30.0A0A498IJQ3_MALDO; Uncharacterized protein
STRINGXP_009373973.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]