PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr017045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33297.1 Da PI: 6.2831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.3 | 9.7e-30 | 18 | 116 | 1 | 99 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppG+rF Ptd+el+ +yL +kv +++l++ + ++ v++y+++P+dL + +e+ewyfF++r++ky++g r+ ra+++gyWkatgk ++++ +g Pbr017045.1 18 LPPGYRFVPTDDELILHYLMRKVLNEQLPI-NRFRIVNLYDHHPRDLTgEYNLIRESEWYFFTSRRRKYPKGGRPCRAADNGYWKATGKPDDIKDDNG 114 79****************************.7799************9444445889************************************99766 PP NAM 98 el 99 +l Pbr017045.1 115 QL 116 54 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-35 | 15 | 126 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.183 | 18 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-14 | 19 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MVPVLNEVGP VDAYIDSLPP GYRFVPTDDE LILHYLMRKV LNEQLPINRF RIVNLYDHHP 60 RDLTGEYNLI RESEWYFFTS RRRKYPKGGR PCRAADNGYW KATGKPDDIK DDNGQLDDCV 120 LCKIYKNSRI KKDGKNNDDN APESTIRTDQ EAILPAVTNT VTSHAFPDQS IQHPYLLTGE 180 SSGTTSSIVN KHFVTSTSTT PAYYEQHYFQ NQTCSDHPGP IYNCDNQIPP PREPFSSQFP 240 LPNSIEHQIG TGWESVNGMP VVDSSSIRLL PHVREYEHAL KAMRNNEGQG TW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-25 | 17 | 104 | 14 | 100 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr017045.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374147.1 | 0.0 | PREDICTED: NAC domain-containing protein 67-like | ||||
Refseq | XP_009374161.1 | 0.0 | PREDICTED: NAC domain-containing protein 67-like | ||||
TrEMBL | A0A498I352 | 0.0 | A0A498I352_MALDO; Uncharacterized protein | ||||
STRING | XP_009374147.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009374161.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15078 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-26 | NAC domain containing protein 47 |