PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CPP | ||||||||
Protein Properties | Length: 607aa MW: 64659.7 Da PI: 7.9493 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41.9 | 2e-13 | 120 | 159 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ Pbr016974.1 120 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 159 89**************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3.2e-16 | 204 | 243 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Pbr016974.1 204 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 243 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.6E-15 | 119 | 159 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.442 | 120 | 244 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.4E-10 | 121 | 156 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 204 | 245 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 207 | 242 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MGEGDGADSA PKKAQSDAAA GTATTSSSSS MNDVPAKKLA RQLDFTGVGS APASVAVPEL 60 PKPPLPTEAV PPSLPKPPVV SVPVPVLVPQ QPHTLKLVKP ESPKSRPRPN VDAKDGTPKK 120 QKQCNCKHSR CLKLYCECFA SGIYCDGCNC VNCCNNVENE GARNDAIEAT LERNPNAFRP 180 KIASSPHGAK DTREEAGEVL ILGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK 240 NFEGSEERQA LFHGDHGNNM VYLQQAANAA ITGAIGSSGY ASSPPVSKKR RGQEFFGPTA 300 KDPSIHRIGQ FQQGNNIRAP APSPQSSVPV NRLGGTAGLG PSKFTYRSLL ADIIQPQDLK 360 ELCSVLVVVA EEAAKTLADQ RNTAEKPTET SLASTTQDML HGQKESDAQN AVADDRSSAN 420 DTDKISPEDS NSDSADVTRG RPMSPGTLAL MCDEQDTMFM SAASPNGLMG DGNTSSQLPN 480 GQGMTEVYAE QERIVLTKFR DCLNRLITFG EIKGKWITFL IWTSYKTKCS SLARREAETQ 540 KDQQSNISTN ARIDSWNPQG PISNGVARTA VPLAPKTTTS QTVTAAVSAL SKTPSHPENG 600 DGRPKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-31 | 121 | 253 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-31 | 121 | 253 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016974.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374041.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A498KCF5 | 0.0 | A0A498KCF5_MALDO; Uncharacterized protein | ||||
STRING | XP_009374041.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2626 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |