PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016932.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 482aa    MW: 53853.9 Da    PI: 6.9775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016932.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.8e-55261651128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdee+++ yL kkv ++++e+  +i e+d++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k   
  Pbr016932.1  26 LPPGFRFHPTDEEIITSYLIKKVINSSFEA-VAIGEADLNKCEPWDLPKEAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNKvkk 122
                  79*************************999.67***************99999*****************************************9754 PP

          NAM  96 kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                  +  +            vg+kktLvfykgrapkgekt+Wvmheyrl
  Pbr016932.1 123 Q--QqqggkgarggclVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 165
                  1..2467888888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6119192IPR003441NAC domain
PROSITE profilePS5100558.03626191IPR003441NAC domain
PfamPF023655.4E-2927165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SSFEAVAIGE  60
ADLNKCEPWD LPKEAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKV  120
KKQQQQGGKG ARGGCLVGMK KTLVFYKGRA PKGEKTNWVM HEYRLDGKIP LYNNLSKAAK  180
DEWVVCRVFH KNMGLKRTLT PTRMNSFGNI GDHDLLDCSS LPPLMDPTLN TSNIMTNKHS  240
SCYGDNDFKP DSIITAPPPS DYHGINTNSY LNYFSLGGGC GGVQGLKQSC NFQLQPNNNY  300
NSYQASSLSN PSNMLYPPPL HHNHQHHHQF QNPSSFPNFQ PNQMMSDSDY FQQGMMRGTQ  360
GQGSVFQTST ITSSDRDDDD QNILKEIAAA NNNNKRKNNN ETSSSGLRGG GLDRHCKVEP  420
FSSNQSMFSF SQDTGLSTDM NTTEISSSFI SKQELGSTNN SSYDQDPSVI PLSDIEGLWD  480
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-502619217166NO APICAL MERISTEM PROTEIN
1ut4_B6e-502619217166NO APICAL MERISTEM PROTEIN
1ut7_A6e-502619217166NO APICAL MERISTEM PROTEIN
1ut7_B6e-502619217166NO APICAL MERISTEM PROTEIN
3swm_A8e-502619220169NAC domain-containing protein 19
3swm_B8e-502619220169NAC domain-containing protein 19
3swm_C8e-502619220169NAC domain-containing protein 19
3swm_D8e-502619220169NAC domain-containing protein 19
3swp_A8e-502619220169NAC domain-containing protein 19
3swp_B8e-502619220169NAC domain-containing protein 19
3swp_C8e-502619220169NAC domain-containing protein 19
3swp_D8e-502619220169NAC domain-containing protein 19
4dul_A6e-502619217166NAC domain-containing protein 19
4dul_B6e-502619217166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981250.0KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353165.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A498I3S30.0A0A498I3S3_MALDO; Uncharacterized protein
STRINGXP_009353165.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-103Arabidopsis NAC domain containing protein 87