PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016796.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 533aa    MW: 60378.4 Da    PI: 6.876
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016796.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.61.9e-29122207187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Pbr016796.1 122 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 207
                  8*************************************99******************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98121180IPR017877Myb-like domain
CDDcd122033.80E-20122187No hitNo description
PfamPF138371.9E-19122208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEMEDQYNMS DLRQLMNGGR THFPTIPLQS PTELFPNHHR EPPPTLHHQH HPYEQLMMMG  60
RSQAHEMISR GLHHHHEFRS PDSTSAAGGV TTPTTVTAAP SLSGGGLETE AGGCLGGEGS  120
GRWPRQETLT LLEIRSRLDF KFKEANQKGP LWDEVSRIMF EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETTNAVVSPS LPVETHFVGN NSSNYRYQAA  240
GNAQANQEIT TPYHHQSSDQ KHCDSLSLSN SSEFGTSSSE DQDINNDVSA AAMDDDLQEV  300
KTTRKRRGGG GGRGWKAKIK EFIDVQMRKL MEKQEEWLER LMRTLEQKER ERVVREEEWR  360
KQEVDRVERE HKFWAKERAW IEARDKALMD ALHKISGGSS STDQAKATNY NSSSPDHHDR  420
DQIVHNMSRS TKELLNKKRK ENANSRSASA ACYFQSNESC SSLYSSQGGY CGEMSNEQGN  480
HDGSNNSPNC GNNANNVGSN AVPDNCFPFL MSEGENLWEN YGLKLSTESQ NQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016796.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352991.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A498I1W60.0A0A498I1W6_MALDO; Uncharacterized protein
STRINGXP_009352991.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.17e-78Trihelix family protein