PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016599.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25806.8 Da    PI: 10.1568
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016599.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Pbr016599.2  9 KRIENTISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
                 79***********************************************96 PP

2K-box72.21.5e-2478145471
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                  ++ + ++++ +e+++ e+ kL ++ie +qr++R++ GedLe+Lsl+eLq+LeqqL+++lk+iR++K  
  Pbr016599.2  78 RQLNGTNSESQENWSVEYPKLAARIEVIQRKLRNFTGEDLEPLSLRELQNLEQQLDTALKRIRTRKVM 145
                  56667778889******************************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-34292IPR002100Transcription factor, MADS-box
CDDcd002651.36E-40274No hitNo description
PRINTSPR004042.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1985147IPR002487Transcription factor, K-box
PROSITE profilePS5129711.40588191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKVQLKR IENTISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD  60
SSMERILDRY EQYTFAERQL NGTNSESQEN WSVEYPKLAA RIEVIQRKLR NFTGEDLEPL  120
SLRELQNLEQ QLDTALKRIR TRKVMKLPQL ILNLSCIIYR YATSGQLINK RFLINTNSIY  180
NSGIFRTNSC MNPFQRCTRR YKVIPHASVW TLICEGEWKD A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-20174173Myocyte-specific enhancer factor 2B
1tqe_R2e-20174173Myocyte-specific enhancer factor 2B
1tqe_S2e-20174173Myocyte-specific enhancer factor 2B
5f28_A2e-20186183MEF2C
5f28_B2e-20186183MEF2C
5f28_C2e-20186183MEF2C
5f28_D2e-20186183MEF2C
6byy_C2e-20174173MEF2 CHIMERA
6byy_D2e-20174173MEF2 CHIMERA
6bz1_A2e-20174173MEF2 CHIMERA
6bz1_B2e-20174173MEF2 CHIMERA
6bz1_C2e-20174173MEF2 CHIMERA
6bz1_D2e-20174173MEF2 CHIMERA
6c9l_A2e-20174173Myocyte-specific enhancer factor 2B
6c9l_B2e-20174173Myocyte-specific enhancer factor 2B
6c9l_C2e-20174173Myocyte-specific enhancer factor 2B
6c9l_D2e-20174173Myocyte-specific enhancer factor 2B
6c9l_E2e-20174173Myocyte-specific enhancer factor 2B
6c9l_F2e-20174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016599.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640230.0KP164023.1 Pyrus pyrifolia clone PpAP1-1 AP1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333659.12e-98PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_009373777.12e-98PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
RefseqXP_018497885.12e-98PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
SwissprotD7SMN62e-81FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0D4ZYV34e-97A0A0D4ZYV3_PYRPY; AP1-like MADS-box protein
STRINGXP_009333658.11e-97(Pyrus x bretschneideri)
STRINGXP_009373776.11e-97(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]