PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016599.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25806.8 Da PI: 10.1568 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ Pbr016599.2 9 KRIENTISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 72.2 | 1.5e-24 | 78 | 145 | 4 | 71 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++ + ++++ +e+++ e+ kL ++ie +qr++R++ GedLe+Lsl+eLq+LeqqL+++lk+iR++K Pbr016599.2 78 RQLNGTNSESQENWSVEYPKLAARIEVIQRKLRNFTGEDLEPLSLRELQNLEQQLDTALKRIRTRKVM 145 56667778889******************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.833 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-34 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-40 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 2.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-19 | 85 | 147 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.405 | 88 | 191 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRGKVQLKR IENTISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SSMERILDRY EQYTFAERQL NGTNSESQEN WSVEYPKLAA RIEVIQRKLR NFTGEDLEPL 120 SLRELQNLEQ QLDTALKRIR TRKVMKLPQL ILNLSCIIYR YATSGQLINK RFLINTNSIY 180 NSGIFRTNSC MNPFQRCTRR YKVIPHASVW TLICEGEWKD A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-20 | 1 | 86 | 1 | 83 | MEF2C |
5f28_B | 2e-20 | 1 | 86 | 1 | 83 | MEF2C |
5f28_C | 2e-20 | 1 | 86 | 1 | 83 | MEF2C |
5f28_D | 2e-20 | 1 | 86 | 1 | 83 | MEF2C |
6byy_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016599.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164023 | 0.0 | KP164023.1 Pyrus pyrifolia clone PpAP1-1 AP1-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009333659.1 | 2e-98 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Refseq | XP_009373777.1 | 2e-98 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 | ||||
Refseq | XP_018497885.1 | 2e-98 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
Swissprot | D7SMN6 | 2e-81 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A0D4ZYV3 | 4e-97 | A0A0D4ZYV3_PYRPY; AP1-like MADS-box protein | ||||
STRING | XP_009333658.1 | 1e-97 | (Pyrus x bretschneideri) | ||||
STRING | XP_009373776.1 | 1e-97 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-71 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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