PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016589.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 423aa    MW: 45890 Da    PI: 8.3534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016589.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-081201521955
                  HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Pbr016589.1 120 LFQMLRDIIPQN----DQKRDKASLLLEVIEYIQFLQ 152
                  699********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
CDDcd000832.81E-7119155No hitNo description
SuperFamilySSF474591.03E-9120173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5120152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11121169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSKNTASSFM SLLGLLSGCF GGETMRSRSG RREDGPEAWN VAAAKHFSSA QKKQKRQNDN  60
ASTQKAPPPT PDPFSAISSS VGPNSGAHLG PGPPHFHHRH RHLSLSHRAL LRVPQYSLSL  120
FQMLRDIIPQ NDQKRDKASL LLEVIEYIQF LQEKVNLYEG SYQGWSPEPT KLMPWRLTDL  180
PFICLPQKGH NRSGENFADQ SQVMNDGSGH ENNVVVSPAM LPNSQNSVES NLGSAVAYKA  240
LDHIAGLATQ SVPNVQQQSI FDSVGSGVPT QPLQESITDA QNMACQPQFP SWAGITSSTV  300
SDGKLNKQDE HSGSGSTSSA YSQGVLNNLT QALQSAGLDL SLASISVQMD VVNRADSGLT  360
SVASSSKAHV NQSMNKQMMT QAQVSSCDGG LELAHKRFXX XXXXXXXXXX XXXXXRFRTR  420
ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016589.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894144e-55KP689414.1 Prunus pseudocerasus isolate CL6922.1 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373761.10.0PREDICTED: transcription factor BIM2-like
TrEMBLA0A498HBY11e-169A0A498HBY1_MALDO; Uncharacterized protein
STRINGXP_009373761.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-37BES1-interacting Myc-like protein 2