PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 380aa MW: 42323 Da PI: 8.0694 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.8 | 3.9e-31 | 140 | 197 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve e Pbr016542.1 140 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEGE 197 579**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.6E-28 | 142 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-24 | 142 | 197 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-30 | 143 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 144 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.0E-18 | 296 | 365 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 301 | 366 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.0E-27 | 306 | 362 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDQLSSQEGE IPLTIPVPIP IPINTSFRSG GHGNLIHHHQ QQHPHDPTAA ATARAAVPHN 60 NNKNNHSNFL PPSTVVPQNQ TPHNTNGSNP MPTGLDHSHE KEEEEQEEEH HDHFNNANAN 120 VVPYKYNTYN NKKQAVVGHN GVRYKECLKN HAAAMGGTAT DGCGEFMPSG EEGTIEALNC 180 SACHCHRNFH RKEVEGEQQH LSSWDHNFHH TINRAAGVSS RKFLLSHERE GGGGGRHKSL 240 LAPPQYPHQH QMIMSNYNMG MRMIGMVGSI PSDQSDEQED HHHHRHHGGG GGGTVGSRPA 300 VGHVAKKRFR TKFTQEQKEK MLNFAEKVGW KIQKQEETFV QNFCQEIGVK RRVLKVWMHN 360 NKHNLANKIN PPPPPPPAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 307 | 364 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016542.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM436118 | 1e-45 | AM436118.2 Vitis vinifera contig VV78X172274.5, whole genome shotgun sequence. | |||
GenBank | FQ383444 | 1e-45 | FQ383444.1 Vitis vinifera clone SS0ABG1YO05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373614.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
Swissprot | Q9M9S0 | 4e-65 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A498HRQ4 | 0.0 | A0A498HRQ4_MALDO; Uncharacterized protein | ||||
STRING | XP_009373614.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 5e-67 | homeobox protein 21 |