PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016487.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 484aa MW: 53684.3 Da PI: 5.0845

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016487.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.6	1.1e-34	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +++k+ll++i+ Pbr016487.1 16 FLLKTYNMVDDSATDEIVSWSSNKKSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKSDPER---------WEFANEDFIQDQKHLLKNIH 103 9************************************************************99988.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Pbr016487.1 104 RRK 106 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.6E-59	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.9E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.16E-34	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.7E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MEGGSTAGGG GGPAPFLLKT YNMVDDSATD EIVSWSSNKK SFVVWNPPEF ARVLLPTYFK 60 HNNFSSFIRQ LNTYGFRKSD PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 PERAALDDEI EKLSNDKAAL EASISTFKQQ RSAAKLQLEN LAQRVSGMEQ RQKNLLTFLD 180 EAVHNPNFIE HLSRKFESMD FSAYNKKRRL PDIENLQPVV ENGFVDNQSS SISEFGNVFH 240 QDFSSKLRLE LSPAVSDMNL VSLSTQSSNE DGGSSTRKIS EELKGAQMRT EGLLFAPETL 300 ELSDTGTSFA FKMDSLLSRK APTVGSPIRH SLQPGLPSNE EGDGNISCQL NLTLASTPSQ 360 VNNSPYSAAV PQVGQDINKS AASELNDKGK EPDLRAFTNK NLADDDKPKT SSQEATHNNQ 420 APALVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRFGHG MSRTVKDAET 480 LTL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MEGGSTAGGG GGPAPFLLKT YNMVDDSATD EIVSWSSNKK SFVVWNPPEF ARVLLPTYFK  60
HNNFSSFIRQ LNTYGFRKSD PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
PERAALDDEI EKLSNDKAAL EASISTFKQQ RSAAKLQLEN LAQRVSGMEQ RQKNLLTFLD  180
EAVHNPNFIE HLSRKFESMD FSAYNKKRRL PDIENLQPVV ENGFVDNQSS SISEFGNVFH  240
QDFSSKLRLE LSPAVSDMNL VSLSTQSSNE DGGSSTRKIS EELKGAQMRT EGLLFAPETL  300
ELSDTGTSFA FKMDSLLSRK APTVGSPIRH SLQPGLPSNE EGDGNISCQL NLTLASTPSQ  360
VNNSPYSAAV PQVGQDINKS AASELNDKGK EPDLRAFTNK NLADDDKPKT SSQEATHNNQ  420
APALVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRFGHG MSRTVKDAET  480
LTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-20	9	105	19	129	Heat shock factor protein 1
5d5v_B	3e-20	9	105	19	129	Heat shock factor protein 1
5d5v_D	3e-20	9	105	19	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016487.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR132193	0.0	KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009373551.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_009373553.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-161	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A172C4J7	0.0	A0A172C4J7_9ROSA; Heat shock factor 2
STRING	XP_009373551.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-163	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]