PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 321aa    MW: 35877 Da    PI: 4.8908
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016430.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092592912355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Pbr016430.1 259 PYPTEEEKLQLSEMTGLDQKQINNWFINQRKRH 291
                  8*****************************885 PP

2ELK39.11.6e-13211232122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++Ll+KYsgyL+sL++EF+
  Pbr016430.1 211 ELKDMLLNKYSGYLSSLRKEFL 232
                  9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.9E-1668112IPR005540KNOX1
PfamPF037902.9E-1670110IPR005540KNOX1
SMARTSM012561.1E-24115166IPR005541KNOX2
PfamPF037911.3E-23118165IPR005541KNOX2
PfamPF037891.8E-10211232IPR005539ELK domain
SMARTSM011883.1E-7211232IPR005539ELK domain
PROSITE profilePS5121311.139211231IPR005539ELK domain
PROSITE profilePS5007112.779231294IPR001356Homeobox domain
SuperFamilySSF466892.52E-19233301IPR009057Homeodomain-like
SMARTSM003892.4E-12233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-27236296IPR009057Homeodomain-like
PfamPF059203.6E-17251290IPR008422Homeobox KN domain
CDDcd000863.28E-12257295No hitNo description
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010073Biological Processmeristem maintenance
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDFHRMNAG VISAGSDDHV NVHQQVENMA TSTSSANCGG FHGSGHVVDD HNMLLFATEG  60
LGSDHMSDLI KSQIASHPRL PDLVAAYLEC QKVGAPAEMK NLLEEIERAS HPMSTCSEIG  120
ADPELDEFME SYIEVLHRYK EELSKPFDEA TTFLTNIQTQ LSNLCKGTFS KTWDYHSDEG  180
VGSSEEELSC GEVEAAEGQD TGGARSSGDR ELKDMLLNKY SGYLSSLRKE FLKKRKKGKL  240
PKDARSTLSD WWITHYRWPY PTEEEKLQLS EMTGLDQKQI NNWFINQRKR HWKPSEDMRF  300
ALNEGVGGSI GGPMMFDTGV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226235LRKEFLKKRK
2232236KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373285.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP296e-99KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A498IJ090.0A0A498IJ09_MALDO; Uncharacterized protein
STRINGXP_009373285.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-79KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]