PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TALE | ||||||||
Protein Properties | Length: 321aa MW: 35877 Da PI: 4.8908 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 259 | 291 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Pbr016430.1 259 PYPTEEEKLQLSEMTGLDQKQINNWFINQRKRH 291 8*****************************885 PP | |||||||
2 | ELK | 39.1 | 1.6e-13 | 211 | 232 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sL++EF+ Pbr016430.1 211 ELKDMLLNKYSGYLSSLRKEFL 232 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.9E-16 | 68 | 112 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.9E-16 | 70 | 110 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-24 | 115 | 166 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-23 | 118 | 165 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.8E-10 | 211 | 232 | IPR005539 | ELK domain |
SMART | SM01188 | 3.1E-7 | 211 | 232 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 211 | 231 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.779 | 231 | 294 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.52E-19 | 233 | 301 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-12 | 233 | 298 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-27 | 236 | 296 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.6E-17 | 251 | 290 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 3.28E-12 | 257 | 295 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 269 | 292 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEDFHRMNAG VISAGSDDHV NVHQQVENMA TSTSSANCGG FHGSGHVVDD HNMLLFATEG 60 LGSDHMSDLI KSQIASHPRL PDLVAAYLEC QKVGAPAEMK NLLEEIERAS HPMSTCSEIG 120 ADPELDEFME SYIEVLHRYK EELSKPFDEA TTFLTNIQTQ LSNLCKGTFS KTWDYHSDEG 180 VGSSEEELSC GEVEAAEGQD TGGARSSGDR ELKDMLLNKY SGYLSSLRKE FLKKRKKGKL 240 PKDARSTLSD WWITHYRWPY PTEEEKLQLS EMTGLDQKQI NNWFINQRKR HWKPSEDMRF 300 ALNEGVGGSI GGPMMFDTGV * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 235 | LRKEFLKKRK |
2 | 232 | 236 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373285.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 6e-99 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A498IJ09 | 0.0 | A0A498IJ09_MALDO; Uncharacterized protein | ||||
STRING | XP_009373285.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-79 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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