PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016268.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LSD
Protein Properties Length: 123aa    MW: 13182 Da    PI: 7.2854
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016268.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.7e-133357125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+Cr lL YPrGA++V C++C+tV
  Pbr016268.1 33 CGSCRRLLKYPRGARHVECSCCQTV 57
                 ************************9 PP

2zf-LSD146.36.8e-157195125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+C +lL+YP+GA sVRC++C++V
  Pbr016268.1 71 CGSCAVLLMYPYGAASVRCSSCNFV 95
                 ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.3E-183060IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-113357IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.8E-126897IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-127195IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MDSKVEVDEA PQPELQSTAA QPSPPSEIAQ MVCGSCRRLL KYPRGARHVE CSCCQTVNFV  60
LEAHQVGQVK CGSCAVLLMY PYGAASVRCS SCNFVTEVGE HNKRPPWSVQ QGQSPAPPNP  120
AH*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352923.19e-86PREDICTED: protein LOL2-like isoform X1
SwissprotO654263e-43LOL2_ARATH; Protein LOL2
TrEMBLA0A498K1H34e-79A0A498K1H3_MALDO; Uncharacterized protein
STRINGXP_009352923.13e-85(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-45lsd one like 2