PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 488aa    MW: 54586.4 Da    PI: 5.9173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016241.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16186281194
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f k+l++sdv+ +gr+++pkk ae++  +++ +e+++lt++d  s + We+k++y  +++s++yv++  +  Fv++++L++gD + ++  ++++++ +
  Pbr016241.1 186 FNKELKNSDVGPLGRIIVPKKEAENNlpMLSDKEGIQLTVRDvHSDQHWEFKYKYwsNNRSRMYVFE-YTGAFVRQKRLEAGDCIYLY--EDECKNIY 280
                  889********************999**77777899******5556*******99877777778888.99***************999..55777665 PP

                  E CS
           B3  94 v 94 
                  +
  Pbr016241.1 281 I 281
                  5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-24179284IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-19184275No hitNo description
SuperFamilySSF1019361.31E-19184283IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-12186282IPR003340B3 DNA binding domain
SMARTSM010194.5E-11186287IPR003340B3 DNA binding domain
PROSITE profilePS508638.684186287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MENFHPPSVP YTTTVTSTHQ TNNSQSSTCE PMSCLPSTTY SPSATQYRYY PALLYARNYY  60
PNHQAGLPMY PFLGGAQPNM VLSREQASLD RSRWILDALM SKSARNERKM ARQRSLSLSR  120
NAANTAVSST CSPPVSRHPP FHGNHDDDTC GIISTSSSGN GADLQNPKEQ LYPFCTPDNK  180
KLRPLFNKEL KNSDVGPLGR IIVPKKEAEN NLPMLSDKEG IQLTVRDVHS DQHWEFKYKY  240
WSNNRSRMYV FEYTGAFVRQ KRLEAGDCIY LYEDECKNIY IYVEKVPRPA PVAEPSSSQQ  300
RNTTTNHTDQ AANINTSLEA NDTDNRKTNT NLKADNTNDK TPNTDAKTHR SNPYVASNLF  360
SPSPSPSPFT YVAGYEEDEL SLELLMEQLK QEQEANVFAD ALSVISASSS AYMEHEEATT  420
LSNNIADCHM ETSTKPPSTL SAGIDPSSSS SSQSRAMVRM VNDDQPEFDD CYKGLGTLPE  480
VDHYKYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-411762803107B3 domain-containing transcription factor LEC2
6j9c_D3e-411762803107B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016241.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502238.10.0PREDICTED: B3 domain-containing transcription factor LEC2
TrEMBLA0A498IWP00.0A0A498IWP0_MALDO; Uncharacterized protein
STRINGXP_009352892.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-42B3 family protein