PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr016241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 488aa MW: 54586.4 Da PI: 5.9173 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 186 | 281 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+l++sdv+ +gr+++pkk ae++ +++ +e+++lt++d s + We+k++y +++s++yv++ + Fv++++L++gD + ++ ++++++ + Pbr016241.1 186 FNKELKNSDVGPLGRIIVPKKEAENNlpMLSDKEGIQLTVRDvHSDQHWEFKYKYwsNNRSRMYVFE-YTGAFVRQKRLEAGDCIYLY--EDECKNIY 280 889********************999**77777899******5556*******99877777778888.99***************999..55777665 PP E CS B3 94 v 94 + Pbr016241.1 281 I 281 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-24 | 179 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.71E-19 | 184 | 275 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-19 | 184 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-12 | 186 | 282 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-11 | 186 | 287 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.684 | 186 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MENFHPPSVP YTTTVTSTHQ TNNSQSSTCE PMSCLPSTTY SPSATQYRYY PALLYARNYY 60 PNHQAGLPMY PFLGGAQPNM VLSREQASLD RSRWILDALM SKSARNERKM ARQRSLSLSR 120 NAANTAVSST CSPPVSRHPP FHGNHDDDTC GIISTSSSGN GADLQNPKEQ LYPFCTPDNK 180 KLRPLFNKEL KNSDVGPLGR IIVPKKEAEN NLPMLSDKEG IQLTVRDVHS DQHWEFKYKY 240 WSNNRSRMYV FEYTGAFVRQ KRLEAGDCIY LYEDECKNIY IYVEKVPRPA PVAEPSSSQQ 300 RNTTTNHTDQ AANINTSLEA NDTDNRKTNT NLKADNTNDK TPNTDAKTHR SNPYVASNLF 360 SPSPSPSPFT YVAGYEEDEL SLELLMEQLK QEQEANVFAD ALSVISASSS AYMEHEEATT 420 LSNNIADCHM ETSTKPPSTL SAGIDPSSSS SSQSRAMVRM VNDDQPEFDD CYKGLGTLPE 480 VDHYKYM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 3e-41 | 176 | 280 | 3 | 107 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 3e-41 | 176 | 280 | 3 | 107 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr016241.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018502238.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | A0A498IWP0 | 0.0 | A0A498IWP0_MALDO; Uncharacterized protein | ||||
STRING | XP_009352892.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28300.1 | 4e-42 | B3 family protein |