PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016237.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 291aa    MW: 31203.1 Da    PI: 8.345
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016237.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.13.9e-382988261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +++  +cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+ 
  Pbr016237.1 29 NQQPHRCPRCHSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRD 88
                 578899**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-253087IPR003851Zinc finger, Dof-type
PfamPF027016.4E-333187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6583387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQQQQQEGGE QSEQQNQDQR LKAAAEQENQ QPHRCPRCHS MNTKFCYYNN YSLSQPRYFC  60
KACRRYWTQG GTLRNVPVGG GCRKGKRDKA GSSSASASRT VQPQQPQPPQ IEQDMVNTLG  120
IGGGSVGMST ENPSGGLAIR HQYYPGASHG YLSSLAGLQS LNQSQPFNVG GGYDPSSNMS  180
LLQGFNLSAP LVVAQPQQRQ QFYQMGGGRS NNLVDQAAPY PSENDQWAPQ SFVNRPSLNA  240
SSSAAEASDS ALWAMGNNPI TTTTTTSSGG STSLNPNQLP DLPGSYGSPN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016237.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352968.10.0PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBLA0A498IXK51e-127A0A498IXK5_MALDO; Uncharacterized protein
STRINGXP_009352968.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.15e-33TARGET OF MONOPTEROS 6