PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016235.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 175aa    MW: 19795.2 Da    PI: 4.8111
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016235.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.4e-4287164178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqv++C+adls++k+y+rrhkvC+vh+ka++++v g +qrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+++
  Pbr016235.1  87 CCQVDNCTADLSDLKQYYRRHKVCDVHAKASSIVVGGFRQRFCQQCSRFHSLSEFDDSKRSCRRRLAGHNERRRKTSS 164
                  6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3481149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18885162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-3886167IPR004333Transcription factor, SBP-box
PfamPF031108.6E-3388161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDSGRAHGKR TMSKYEVEEE EEEEEEEEEE EEEEEEEEEE EEESRSRRPS IVYGEDEGRT  60
RVMMVNSTAA TPSGGRSGTG GSTAGPCCQV DNCTADLSDL KQYYRRHKVC DVHAKASSIV  120
VGGFRQRFCQ QCSRFHSLSE FDDSKRSCRR RLAGHNERRR KTSSEYHGHG GTSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3878161184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738540.0KF673854.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352877.11e-122PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387407e-41SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLV9Q3Y74e-96V9Q3Y7_MALDO; SBP-box transcription factor
STRINGXP_009352877.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-41squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]