PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016205.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 325aa    MW: 36356.6 Da    PI: 7.7697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016205.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.96e-34561961128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+Ptd+e++ ++L++kv +++      ++++   ++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W+
  Pbr016205.1  56 LPAGVKFDPTDQEIL-QHLEAKVLSDTrrlhplIDEFIPtLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgsETRWH 151
                  799***********9.99****999996765442222222333336**********.666777788******************744446555778** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Pbr016205.1 152 KTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 196
                  **********.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3850215IPR003441NAC domain
PROSITE profilePS5100533.9156215IPR003441NAC domain
PfamPF023651.7E-1557196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTWCNDSDDE RAIQIIGAPP PNNPNNPNEF RNITCPSCGH HIEFQDQAGI HDLPGLPAGV  60
KFDPTDQEIL QHLEAKVLSD TRRLHPLIDE FIPTLEGENG ICYTHPEKLP GVNKDGQIRH  120
FFHRPSKAYT TGTRKRRKVH TEEDGSETRW HKTGKTRPVL VGGAVKGFKK ILVLYTNYGR  180
QRKPEKTNWV MHQYHLGNNE EEKDGELVVS KVFYQTQPRQ CGSSKDVPAI DHHQSVNIRG  240
GQGHDGLISA STNPFPLAKK AGLVEYYDPG GPFINYDHHQ HNHNQGGDNR ESPPQLIPNL  300
VAQGDGSSFI RLTSDASKGK LERK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981190.0KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352845.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A498IWZ20.0A0A498IWZ2_MALDO; Uncharacterized protein
STRINGXP_009352845.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]