PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016193.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

VOZ

Protein Properties

Length: 485aa MW: 53792.3 Da PI: 6.0326

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016193.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	435.7	6e-134	208	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 pppsaflgpkcalwdc+rpaqg++w+ dycssfha+lalneg+pg+ pvlrp+gi+lkdgllfaalsak+qgk+vgipecegaatakspwna elfdl Pbr016193.1 208 PPPSAFLGPKCALWDCPRPAQGMDWWLDYCSSFHAALALNEGPPGVGPVLRPGGIGLKDGLLFAALSAKAQGKSVGIPECEGAATAKSPWNARELFDL 305 89********************************************************************************************** PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksa 196 s+lege irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++d +alyrlelklvd+kk++ Pbr016193.1 306 SVLEGEVIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDVCALYRLELKLVDGKKNS 403 ********************************************************************************************** PP VOZ 197 kgkvskdsladlqkklgrlta 217 kgk+++ds+adlqk++grl+a Pbr016193.1 404 KGKLTNDSVADLQKQMGRLSA 424 *****************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MKGSKSNCKS ASHKLFKDKA KNRVDDLQGM FMDLQFARKE SRSIDAALLE EQVHQMLREW 60 KAELNEPSPA SSLQQQGGSL GSFSSDIYRL LQLCEEEDDA TSPLAAPKPE PNDQNLQVGG 120 SSVFHEGFSV NQGQQEHAIP LADQCKSSPS GVRNVAVNNL EGANQLDYHQ FELHQDFEQS 180 FYPCFSGTAL SGEDTLPQVS TYLPSIFPPP SAFLGPKCAL WDCPRPAQGM DWWLDYCSSF 240 HAALALNEGP PGVGPVLRPG GIGLKDGLLF AALSAKAQGK SVGIPECEGA ATAKSPWNAR 300 ELFDLSVLEG EVIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN HFEWHLYEYE INKCDVCALY RLELKLVDGK KNSKGKLTND SVADLQKQMG 420 RLSAEFPTDN KRTVKGRAKI NARVGVGNVY YSPNRGATTN ATFDYGSGAP YDYLLDDVNG 480 YYLT*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MKGSKSNCKS ASHKLFKDKA KNRVDDLQGM FMDLQFARKE SRSIDAALLE EQVHQMLREW  60
KAELNEPSPA SSLQQQGGSL GSFSSDIYRL LQLCEEEDDA TSPLAAPKPE PNDQNLQVGG  120
SSVFHEGFSV NQGQQEHAIP LADQCKSSPS GVRNVAVNNL EGANQLDYHQ FELHQDFEQS  180
FYPCFSGTAL SGEDTLPQVS TYLPSIFPPP SAFLGPKCAL WDCPRPAQGM DWWLDYCSSF  240
HAALALNEGP PGVGPVLRPG GIGLKDGLLF AALSAKAQGK SVGIPECEGA ATAKSPWNAR  300
ELFDLSVLEG EVIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPLN HFEWHLYEYE INKCDVCALY RLELKLVDGK KNSKGKLTND SVADLQKQMG  420
RLSAEFPTDN KRTVKGRAKI NARVGVGNVY YSPNRGATTN ATFDYGSGAP YDYLLDDVNG  480
YYLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016193.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB531023	0.0	AB531023.1 Malus x domestica MdVOZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352831.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A498ISJ3	0.0	A0A498ISJ3_MALDO; Uncharacterized protein
STRING	XP_009352831.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]