PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016187.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WOX
Protein Properties Length: 409aa    MW: 44755.6 Da    PI: 7.4868
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016187.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1758118257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Pbr016187.1  58 KPRWNPKPEQIRILEAIFNSgVVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 118
                  89*****************99*************************************995 PP
2Wus_type_Homeobox110.96.9e-3657119264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
        Pbr016187.1  57 PKPRWNPKPEQIRILEAIFNSGVVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-742117IPR009057Homeodomain-like
SuperFamilySSF466891.37E-1154121IPR009057Homeodomain-like
PROSITE profilePS5007110.38254119IPR001356Homeobox domain
SMARTSM003896.0E-856123IPR001356Homeobox domain
CDDcd000865.74E-857119No hitNo description
PfamPF000464.4E-1558118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPADCS THHQCQHDIS PSLVSNSCHQ PSSFSSVGGC EERSPEPKPR  60
WNPKPEQIRI LEAIFNSGVV NPPRDEIRKI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKL  120
RNLHNSSKQQ QTHHRHTHLP ISTPVSAATT LNVINAAAPS SSSSSSEKSS PKAPNNKAFS  180
MGFSTHDVSI NSPIASVNQS TNFFQPHHPH HNEVLPESPF FFPVHQGNIN PNLTQGFCFS  240
ELANVDHVPN HEQTNNNNIG PCTSLLLSEI MNHGGISGKE YHHQEDQIKA MKNVDNQQHL  300
NYNINVTTSP TTAAAASTAS TVAVPTPMFH NIQGSVGEAG AMAPGGPAKS TVFINDVAFE  360
VGAGPFNVRE AFGDDAVLIH SSGQPVLTNE WGLTLHPLHH GSFYYLVY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016187.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352828.10.0PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLA0A498IVT40.0A0A498IVT4_MALDO; Uncharacterized protein
STRINGXP_009352828.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-63homeobox-3