PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 24708.3 Da PI: 8.7621 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.7 | 1.8e-33 | 34 | 135 | 3 | 101 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg.........k 89 ++kdr s ++T++g+RdRR Rls ++a++f+d+qd+LG+d++sk+i+WL++++k+ai +l g++++ + +c++++ ++ ++++g + Pbr016172.1 34 ARKDRRSNVYTSKGPRDRRFRLSPHTAIQFYDVQDRLGHDRPSKAIDWLIEKSKAAIEALSGSEQPCQyyYDCTNSNVLGQQTEQEIGeqskhqfwnH 131 79*************************************************************88888665553333333333333332222233431 PP TCP 90 aaksaakskksq 101 +s+ Pbr016172.1 132 --------PESN 135 ........2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-28 | 34 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.705 | 35 | 93 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MATSKSAFKQ QQVDNTRYGK IVRVQGRHIV RSMARKDRRS NVYTSKGPRD RRFRLSPHTA 60 IQFYDVQDRL GHDRPSKAID WLIEKSKAAI EALSGSEQPC QYYYDCTNSN VLGQQTEQEI 120 GEQSKHQFWN HPESNRELGT MSNGSPMNNV NNFKEPVFDP HQLSSLNYAE QALDPTSSLS 180 DSKVTEMGWF QSLVAWNYNA GDGGKICPYN SSHVSLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-18 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-18 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016172.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352957.1 | 1e-165 | PREDICTED: transcription factor TCP4-like | ||||
TrEMBL | A0A498ISM7 | 1e-145 | A0A498ISM7_MALDO; Uncharacterized protein | ||||
STRING | XP_009352957.1 | 1e-164 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14863 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 4e-36 | TCP domain protein 10 |