PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016145.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 269aa    MW: 29049.9 Da    PI: 8.0758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016145.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-1177123354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  Pbr016145.1  77 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKATLLAAVISQVKEL 123
                  58*************************8.....7********9999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.12974123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1278126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1278125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.51E-5161233No hitNo description
Gene3DG3DSA:3.30.70.2603.9E-4161223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDYYSFSSKS SFGSDFSSLF DPFKHDVSGF GGASRSGAAA NLPHSLVLDS EKGELVKAPA  60
RVGKKEVPEA KALLALKNHS EAERRRRERI NAHLSTLRGL VPCTEKMDKA TLLAAVISQV  120
KELKMDALES SKGFLIPVDA DEVKIEPYVA AGDGTISVKA SVCCEYRSEL LSDLREALDS  180
LHLKMVKAEI ATLGNRVKNV FVLTSSKPGS NDSDAEAYEL LASSVHQVLS SVLDKASASP  240
EYSPRTTLLS KRRRLSYFDK IDTSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2250254KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352784.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A498ISP61e-157A0A498ISP6_MALDO; Uncharacterized protein
STRINGXP_009352784.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-34basic helix-loop-helix 32