PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016131.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 449aa    MW: 49167.1 Da    PI: 5.4167
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016131.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61e-1535126187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k + ++ + + +s++p+f++l+a
  Pbr016131.2  35 CWSEDATSTLVDAWGRRYIELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKVRVSSSNGTLTSSWPFFERLDA 126
                  7****************************************99999*********************9999999988888889******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-2633127No hitNo description
Gene3DG3DSA:3.90.70.103.3E-6292355No hitNo description
SuperFamilySSF540012.95E-12293415No hitNo description
PfamPF001123.3E-5362416IPR000668Peptidase C1A, papain C-terminal
Gene3DG3DSA:3.90.70.102.9E-7363415No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGDLTDLQIT PFNAGTTAST PPSSKPRPMP VREDCWSEDA TSTLVDAWGR RYIELNRGNL  60
RQKDWQEVAD AVNALHGHTK KTHRTDVQCK NRIDTIKKKY KVEKVRVSSS NGTLTSSWPF  120
FERLDALIGS NVKKASPSPH SPSLPVAVPL PLGYRKTPSS APVVTAVALP QKRSASTAAL  180
DEAAGADDED DEDEDEDDDD NDEADEEVEM ARESGGEVGS GGGGGEGLKR LARAIERFGE  240
VYQRVEAEKL RQMVELEKQR IQFANELEVE RMRMIMDTQV QLERIKHGKR SGSNDLTNEE  300
FREHSCITGY KKQSSKVFVS IGAAAGFKHG SVTEMPPSVD WGEEGIVTPI KDQENVVKIT  360
WLSPVFVAID ASRSAFHLYS SRVLTGTGTC NLDYVFTAVG YETSGDGTKC WVVKCSQKMG  420
RVDSMAAMPK DGLSVIGIYN GMIKNGKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016131.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502217.11e-166PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A498IVY41e-162A0A498IVY4_MALDO; Uncharacterized protein
STRINGXP_009352769.11e-166(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-41sequence-specific DNA binding transcription factors