PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SBP | ||||||||
Protein Properties | Length: 420aa MW: 46765.7 Da PI: 8.1748 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.2 | 5.5e-39 | 172 | 249 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvC +hska+ v+v g+ qrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++ Pbr015983.1 172 RCQVEGCHVALLNAKEYHRRHKVCAMHSKASRVTVLGQDQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSH 249 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 31.505 | 170 | 247 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.9E-32 | 170 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-37 | 171 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-30 | 173 | 246 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDMLSHDVNN FSSREQNGRN NSQLPNSWVI WDTTTTSHTT AAPTNNNNHV LYSTAATAVT 60 VAAIGEEASS STTTGGHALF TGHPLHHQFS NMYSCWADHG GGPHFHQDPH LMCLKLGKRH 120 YFEDHGNHAP PLDERHVAGF PVGMMSKKGK AAAAAAQLYG AGQPLALKVV PRCQVEGCHV 180 ALLNAKEYHR RHKVCAMHSK ASRVTVLGQD QRFCQQCSRF HVVSEFDESK RSCRRRLAGH 240 NERRRKSSHD PLARSSSQDN KLMTGRFQYL SSTTGRALSL LSSKTTLDSW VSPSDLSSRS 300 STALRELIAE NRAANLARQL MSSDRNWDSS SHNNNVTEDL FCDHGQSWSN SVEPHQHQMF 360 PENQHGWDRF HESSGAHLTL DLRRPPSQAY GFMSERAKTK AEEDQECDLW NSFQGTSVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 173 | 246 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015983.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373188.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
TrEMBL | A0A498JCH4 | 0.0 | A0A498JCH4_MALDO; Uncharacterized protein | ||||
STRING | XP_009373188.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-33 | squamosa promoter binding protein-like 9 |