PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015799.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 686aa    MW: 75019.8 Da    PI: 6.5113
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015799.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094244611954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Pbr015799.1 424 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 461
                  664459******************************88 PP
2BELL125.71.7e-40286357172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag gsakpYt++Al++iSrhFrcL dai++qi
  Pbr015799.1 286 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGSGSAKPYTAVALQTISRHFRCLHDAITGQI 357
                  689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-58205355IPR006563POX domain
PfamPF075261.2E-48212354IPR006563POX domain
PROSITE profilePS5007112.05402465IPR001356Homeobox domain
CDDcd000864.88E-13405466No hitNo description
SMARTSM003893.2E-9405469IPR001356Homeobox domain
SuperFamilySSF466894.71E-17406472IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28408471IPR009057Homeodomain-like
PfamPF059202.6E-17422461IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MSSYYTGSNS QKDATPMLYL REPLPSSYPE APLVSGNMMM YMNSGSYSDA LAGSSQQQNN  60
LGSAVGGSDS NQQQHDVLSH LGGTHVGEQG FSPWREGRNE MLVTHPMGGS SGILHGGHNL  120
QGQGLSLSLS TQIPSGMQMP SISYRNNNMG FASFLSPNAS VSSEGDGRNG SFRDEQPRNV  180
EYLQSGFPGG NPDSSKGDLS PYGMSSMART IPHNKYLKAA QQLLDEVVNV QKALKQHDRE  240
KNQSTHNHQK SFKEGDDGSK NDLESGVSTN PQEPASNPPC ELSHAEKQEL QSKLTKLLSM  300
LDEVDRRYKQ YYHQMQIVVS SFDAIAGSGS AKPYTAVALQ TISRHFRCLH DAITGQIRAT  360
RKSLGEQGTS GSMKGVGISR LRYVDQHLRQ QRALQQLGMM QQHAWRPQRG LPESSVSILR  420
AWLFEHFLHP YPKDSDKILL ARQTGLTRSQ VSNWFINARV RLWKPMVEEM YKEEAGDAEM  480
DSNSSSENTP QTKKGDNTRT MEDGVEGMQP SASSAAIEKF STGQFMDSKS DHFHDVEMAG  540
STGYANFQNV TRHEAEAEYG LVKLREGQRP GMDDSSLFSD ANVQTDRNSE RFTAAAAAYH  600
MPELGRFGSG SGVSLTLGLQ HCDGGGSLPI PSGTHHGFVS VRGDDLYNPA ASSVGSETAD  660
FECLDSGNQQ QHRFSSSHLL HDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16411468158Homeobox protein Meis1
4xrs_B2e-16411468158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015799.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372989.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A498J1C40.0A0A498J1C4_MALDO; Uncharacterized protein
STRINGXP_009372989.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-123BEL1-like homeodomain 6