PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015675.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 334aa    MW: 37250.8 Da    PI: 8.9484
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015675.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-104588245
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                 k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Pbr015675.1 45 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 88
                 567899*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-83791No hitNo description
SMARTSM003381.1E-744107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154690IPR004827Basic-leucine zipper domain
PfamPF001702.0E-74688IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74891No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141442.4E-33130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MADGSPRTDI STDVETDDKN QRFDRDQYAI APVASDSSDK SKDPKDQKTL RRLAQNREAA  60
RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISN SGDAAHSNSG NGAMAFDVEY  120
GRWQEEHNRQ INELRSAVNS HASDAELRII VDGVLAHYDE VFRLKGTAAK ADVFHLLSGM  180
WKTPAERCFL WLGGFRSSEL LKLLVTQLEP LTEQQLVGIN NLQQSSQQAE DALSQGMEAL  240
QQSLAETLSS GSLGSSGNSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR QQTLQQMHRI  300
LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981380.0FJ598138.1 Malus hupehensis TGA1a-related protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372782.10.0PREDICTED: transcription factor TGA2.2-like
RefseqXP_009372783.10.0PREDICTED: transcription factor TGA2.2-like
RefseqXP_009372784.10.0PREDICTED: transcription factor TGA2.2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLG8XUV60.0G8XUV6_MALHU; TGA1a-related protein 6
STRINGXP_009372782.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.21e-152OCS-element binding factor 5