PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015636.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SRS
Protein Properties Length: 306aa    MW: 32604.2 Da    PI: 8.9021
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015636.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702181.53.5e-561212644154
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                  + ++C+dCGn+akk+C+++RCRtCC+ rg++C+thvkstWvpa++rrerq++ + a       + ++ s +  +     + ++ s   ++a s+    
  Pbr015636.2 121 NMKACKDCGNRAKKGCEYRRCRTCCRGRGYHCSTHVKSTWVPASRRRERQNMVTVAVPGVGGGEGSSGSSSVAKR---PRVSVPS---QNA-STDANV 211
                  5679************************************************99998887766644433333222...1111111...112.222334 PP

       DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++slP++v+++avfrc rv+++++ge+elaYq++v+i+Ghvf+G+Lyd+G++e
  Pbr015636.2 212 KRSLPDKVRAPAVFRCHRVTAISNGEAELAYQATVKISGHVFRGLLYDHGVDE 264
                  567***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.3E-56123263IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.6E-24125166IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.4E-26215262IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLGLRDILLI APTPTSLHHQ QHQPISSDHH TALPLPSSAA LGVGLGIFPL LTATPHAPTA  60
EGNSDTSHYW GLRKYQDPNS SKQDMLNFGN QNHGGAQQHE QVVDCHGNND RDGAGGGKSS  120
NMKACKDCGN RAKKGCEYRR CRTCCRGRGY HCSTHVKSTW VPASRRRERQ NMVTVAVPGV  180
GGGEGSSGSS SVAKRPRVSV PSQNASTDAN VKRSLPDKVR APAVFRCHRV TAISNGEAEL  240
AYQATVKISG HVFRGLLYDH GVDENNTLPC ISQPNLESDT NQRNADSAST PTVPPSNNAC  300
PTSTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015636.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372746.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
TrEMBLA0A498KI400.0A0A498KI40_MALDO; Uncharacterized protein
STRINGXP_009372746.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-37Lateral root primordium (LRP) protein-related