PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015630.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 483aa    MW: 53752.2 Da    PI: 4.8961
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015630.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-351432342102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+e+++++sws++ +sf+v+d  ef++++LpkyFkh+n++SF+RQLn+YgFkkv+ ++         weF+++ F+ gkk+ll++ik
   Pbr015630.1 143 FLNKTFQMVDDPETDSVVSWSHTRQSFIVWDLYEFSRTLLPKYFKHNNISSFIRQLNIYGFKKVDPDR---------WEFANEGFQGGKKHLLKNIK 230
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Pbr015630.1 231 RRRR 234
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-33139232IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-37139232IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-57139232IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18143166IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-30143232IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18181193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340182206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18194206IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVVPDGGGSS GGGDGDGTPS RPLSSKTQFP KTSNGLKQAE NELDQVKDEV TELKKGIKTL  60
TSSKGGNFDL LSSSSSSAAP PNRAAESLHV KEETVDVVVV EDDDFDGGGH FNTINGRGGD  120
FGSSSMELPK PMEGLREVGP PPFLNKTFQM VDDPETDSVV SWSHTRQSFI VWDLYEFSRT  180
LLPKYFKHNN ISSFIRQLNI YGFKKVDPDR WEFANEGFQG GKKHLLKNIK RRRRYNNKPT  240
PVAAHSTKAR LEAEIESLKK DQDFLRLEIL NLRQQQKYSQ HQLTAVEQQI RSSVCKQQSM  300
LFFLTKTTMN PTFVQQLMLK RVIKRELDGG DLGKRRRLSP AQDIESFDEW INASLRFDCR  360
GQIEEDLVPM QSALAEQISE GIASKQNETP LSSPIVDKSC NAGQDLNPSV MAGTSSSEYV  420
PCAYDDMSDK FLEEYIVFDD ECALNDSSLY QELEDLIVKP CDWSAYVSNS LVEQAGCIGS  480
VP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2312423210129Heat shock factor protein 1
5d5v_B1e-2312423210129Heat shock factor protein 1
5d5v_D1e-2312423210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231LKNIKRR
2333337KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015630.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352681.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A498HXN50.0A0A498HXN5_MALDO; Uncharacterized protein
STRINGXP_009352680.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-75heat shock transcription factor A2