PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 16823.2 Da PI: 5.9569 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102 | 5.5e-32 | 6 | 100 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++ C la yfpa++ +f n++++FG+sn+ k++++++ ++r++a++++++e++++ ++P G++gv + l +q++ ++el+ Pbr015611.1 6 ACAACKYQRRKCNQTCELAAYFPASRFVEFVNAQHMFGMSNIEKIIATVELDQRPAAAETILFEGNIWRNNPSVGCLGVTRFLLEQVDFYEKELE 100 7****************************************************************************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.986 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-28 | 6 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MANSKACAAC KYQRRKCNQT CELAAYFPAS RFVEFVNAQH MFGMSNIEKI IATVELDQRP 60 AAAETILFEG NIWRNNPSVG CLGVTRFLLE QVDFYEKELE FPRITADMKK YEERYIYMSS 120 LKDAQEKAFD IGLMQPASFS GPGESRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-16 | 7 | 100 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-16 | 7 | 100 | 12 | 105 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015611.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018502144.1 | 1e-107 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A498HT39 | 3e-79 | A0A498HT39_MALDO; Uncharacterized protein | ||||
STRING | XP_009352702.1 | 1e-105 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14432 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-28 | LOB domain-containing protein 22 |