PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015608.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 599aa    MW: 66606.8 Da    PI: 6.6242
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015608.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06305327426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +lC  f  +G C++G++C+F H+
  Pbr015608.1 305 RLCFKFVSSGSCPRGESCNFQHD 327
                  566667778*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.96E-337226No hitNo description
PROSITE profilePS5010313.591301329IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054303328IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4305327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5305330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6305329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906333361IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4338362IPR000571Zinc finger, CCCH-type
PfamPF046771.1E-38377492IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541974.68E-7381462IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.104.1E-5384500IPR011146HIT-like domain
PfamPF046761.6E-14519595IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAPPKILLSG DVSGNLKQLF KRVVSVNKSA AGPFDALLCV GQFFPDLADQ LDEFNDYIEG  60
RAQIPLPTYF IGDYGVSAAK VLLAATRDAG NQGFKLDGLK ICDNLYWLKG SGKFTLHGLS  120
VAYLSGQQYS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANTSDVP PVAYEPFGSD  180
NIVAELVAEI KPRYHIAGTK GVFFAREPYS NVEAVHVTRF LGLAPVGNKD KQKFIHALSP  240
TPASTMSAVE IRTKSTTTTL SPYTYEEKTA HSMEAGKRSS DSISDSQYWR YDVSQKRQKH  300
GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF EFMNKGKCER GPDCKFKHSL  360
QDEGESNSQQ RRGSGNANSN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TVSLPSECEI ELDKFQNALK KYYNKQGKEV VFFEWASRRT THANLQAVPV  480
PSAKAADVKN IFNLAAERQG FKFTTMKSSN NYDGRTLLGE QFDRNFSFFY AQLPDGTILS  540
HSIEENEKFL PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015608.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352659.10.0PREDICTED: zinc finger CCCH domain-containing protein 64-like
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A498KF970.0A0A498KF97_MALDO; Uncharacterized protein
STRINGXP_009352659.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923