PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015480.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 391aa    MW: 42192 Da    PI: 7.2971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015480.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00052522901255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Pbr015480.2 252 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 290
                  6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.681240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-6250294No hitNo description
SuperFamilySSF474595.5E-10250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7254296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNRGGCQSSP VQQMIAGNPN WWSINSMRPP STQPSMNISP FFQPPPPLPS NFLIPQFAPS  60
NNNTSPSSTT SSSGLAIPSW HIENNIQELP ESWSHLLLGG IVGEDEKGAI MRQFHQAAKK  120
LENWEEQILN SAQAPNAPAV DVKQENSGNS NGFVYGHHQG NDHIRDFNPS AAALSSLSQI  180
MQSTAASAAS SPKSSCVTSF SNNNMLDFSS KSDVRHPPPH RSSDQCNSTG NGGALKRARV  240
QPSSTPTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY  300
LGSGSGNMRQ QPQFAVHGER NCMFPEDPGQ LLNDNCMKRK GASEQDPHEE PKKDLRSRGL  360
CLVPVSCTLQ VGSDNGADYW APALGCGGFQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352503.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D11e-100BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A498I0E40.0A0A498I0E4_MALDO; Uncharacterized protein
TrEMBLA0A498KEB50.0A0A498KEB5_MALDO; Uncharacterized protein
STRINGXP_009352503.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]