PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015263.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 283aa    MW: 31058.6 Da    PI: 8.8544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015263.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.4e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+ E+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
      Pbr015263.1  5 KQKWTAAEEEALLAGVAKHGPGKWKNIIKDPEcapflIHRSNIDLKDKWRNL 56
                     79*************************99998998*999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.681161IPR017930Myb domain
SuperFamilySSF466894.09E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-14456IPR009057Homeodomain-like
SMARTSM007171.5E-7459IPR001005SANT/Myb domain
PfamPF002498.3E-8556IPR001005SANT/Myb domain
CDDcd116608.20E-21656No hitNo description
SMARTSM005262.3E-10114181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.25E-12114190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.553116186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.0E-11116188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.9E-9118181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGNQKQKWTA AEEEALLAGV AKHGPGKWKN IIKDPECAPF LIHRSNIDLK DKWRNLGVNS  60
CGHGSKERPR ATKIRKVVGT QHDIVQSPAS AASVRPNASL VAVTNDALST ASDGKNAPRY  120
DAMIFEALFT MKDKDGSTIG AILNYIEQRH EVPVPANFRR VLGTRLRQLA MQGKLDKAQN  180
GYKIKKDATL VAEAPISTPD QKEVRPRKLQ NYVPMISTET VKDAADNAAY KLVDADNKSF  240
LAIQAMKEAE RVSMMAEDTD SMLLLIEEIY EQCLCGEVVA LA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372396.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L16e-70TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A498J0K90.0A0A498J0K9_MALDO; Uncharacterized protein
STRINGXP_009372396.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-67MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]