PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015248.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 346aa    MW: 38218.7 Da    PI: 9.726
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015248.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.43.8e-31186242158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVNaKQy++Il+RRq R kle+++kl  k rkpylheSRh hAl+R+Rg+gGrF
  Pbr015248.1 186 DEPIYVNAKQYRAILRRRQFRSKLEAQNKL-VKVRKPYLHESRHVHALKRARGTGGRF 242
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-35184245IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.143185245IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-25187242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-22188210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-22219242IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQNLDKKNSG FGSAHLKFPF VVGSSSWENS TETHVQHSSS SNSLILNMGV PLHNYHNSKQ  60
SRINFQDQDS SSTLSTGQSL SEVDSMKEGN PCGQGIVSAQ SGYNETQRKP VGAHMKSLSP  120
MENQSFIFPS QIDFNRSIGH IPFHYAEPYF GSLLATACGP QATIHHPQVV GITPGRVPLP  180
LDLTEDEPIY VNAKQYRAIL RRRQFRSKLE AQNKLVKVRK PYLHESRHVH ALKRARGTGG  240
RFLNVKKVQD SKPNTTHLRV NASGTAQLHL IGNMSESEVH EPDNYRDGAS TTSCYEVTST  300
SNSADVFPRQ DLRLSAYPSH IGGTMQVPFV DVRGGGNQHH HSILR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19186246262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372379.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A498IZW10.0A0A498IZW1_MALDO; Uncharacterized protein
STRINGXP_009372379.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-74nuclear factor Y, subunit A3