PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015239.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 704aa    MW: 76976.8 Da    PI: 7.321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015239.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-08589637348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
      Pbr015239.1 589 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 637
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.069582641IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-12584643IPR009057Homeodomain-like
SuperFamilySSF466891.63E-15584650IPR009057Homeodomain-like
SMARTSM007171.2E-8586639IPR001005SANT/Myb domain
CDDcd116602.29E-19588638No hitNo description
PfamPF002494.3E-6589637IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
METVVGVEGN DEGMCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDDVME  60
VEDFLVDETV ELPVITEAGN GRCISNEESS SGKPQKGSSE GVSHSENTEA DVKLSARLEY  120
IEEMLQKVKQ EERLRLACGS PDHSSAFMNV DIQCSDQHDK LPATDDRLQS EIPLQDIVPS  180
SSLSPDGSHI NESGRIGECS KQPLDGPIES GSSASVICTG PKPDVNTLKG EICLDNLSIR  240
ELHELFRATF GRETTVKDKL WLKRRITMAL TNSCDVSTTT FTIVDNKLVN KGKDDSIQNA  300
DGMHKLVNKG KDDSIQNADG MLTEGSDGEA KNLGYETSPT SHSSKMENHV TVSGKRFVNI  360
SAELDCGSED LHTDQRAAKR IRKPTKRYIE ELSEVESKDC SPKVTSPVKS AGQRQTSPKS  420
CRPLGNVPLN ERAIATRLDP LGSVTNVPPN ERTFVTRLDS LGGSGVQVPY VSRVRRSRPR  480
KNIMALMKFD MSGMGVTAKL VKEAFSVRSS VSESEHVDKV LKVRSASERM KPRCTAEPEK  540
DKRRSVMGTI EPRKNLGIKQ TDSSEDNSDD GTAQIPTAKG GMRRKHHRAW TLVEVIKLVE  600
GVSKCGTGRW SEIKRLSFAS YSYRTSVDLK DKWRNLLKAS VAQTPPDDGI NSRKHASVPI  660
PASILLKVRQ LAEMQVQVPP NLGPSKLATV SSRSVHQMRP GFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474480RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015239.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372359.10.0PREDICTED: uncharacterized protein LOC103961527 isoform X5
TrEMBLA0A498J4Q30.0A0A498J4Q3_MALDO; Uncharacterized protein
STRINGXP_009372352.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-110TRF-like 6