PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015227.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 556aa    MW: 61223.2 Da    PI: 6.4662
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015227.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11263319155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e Aa+a++ a++k++g
  Pbr015227.1 263 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEERAARAYDLAALKYWG 319
                  78*******************433.44555535555.779999**************98 PP
2AP247.74e-15362413155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pbr015227.1 362 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413
                  78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-14263329IPR016177DNA-binding domain
PfamPF008471.8E-8263319IPR001471AP2/ERF domain
CDDcd000183.28E-18263329No hitNo description
PROSITE profilePS5103217.187264327IPR001471AP2/ERF domain
SMARTSM003804.9E-22264333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-12264328IPR001471AP2/ERF domain
PRINTSPR003673.0E-6265276IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17362423IPR016177DNA-binding domain
CDDcd000181.98E-23362423No hitNo description
PfamPF008475.7E-10362413IPR001471AP2/ERF domain
PROSITE profilePS5103218.913363421IPR001471AP2/ERF domain
SMARTSM003809.0E-33363427IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18363422IPR001471AP2/ERF domain
PRINTSPR003673.0E-6403423IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSNWLGFSLA PHLRIHEGFG GREDEQEHVG GGGFSSEMTI MPLRSDGSLC VSADPFSRSN  60
GSEDWRYENQ MGATSETAAD PNEEGPKLED FLGSCYSSSP PPTDETKAYN FHTQQDQNQD  120
SPISQINVNE SPNFTTTTPS NGEIEPSRDH FINNQPYTHY CNTLNPAQSL VPSNGMYKSW  180
LGQTLPFCDE KSLCGGDHQS ALSLTMCPSL QNGSNNNNNN NNMGVISHQQ IQIVDNKKRA  240
VGKSPAREPV PRKSLDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCRKEG QTRKGRQGGY  300
DKEERAARAY DLAALKYWGS TTHINFPLST YEKELEEMKN MTRQEFVANL RRKSSGFSRG  360
ASVYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGISAVTNF  420
DMSRYDVKRI CSSSTLIASD LAKRSPKDSA PPAAAIEDFN SCASSTSPHP LLAITSGVEP  480
SDDLADMMWN NAAEDHSNTT APLGASSPKS HEFGIAGGDY SHAYFSAGNN GGTDHSRLGN  540
LGLVQQVPMF ALWND*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015227.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372414.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-134AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A498J5V90.0A0A498J5V9_MALDO; Uncharacterized protein
STRINGXP_009372414.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-131AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]