PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015161.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 470aa    MW: 51392.5 Da    PI: 7.29
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015161.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40180256278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  CqvegC+ dls+ak+yhr+h++C  hsk+p+v+v+g+e rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Pbr015161.1 180 CQVEGCNLDLSSAKDYHRKHRICANHSKSPKVVVDGVELRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPQT 256
                  **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32176241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-38179259IPR004333Transcription factor, SBP-box
PfamPF031101.3E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEWNEKPPSL WDLDNLFMYG TKVTENPRKL QPADWGIEGE RGMNSESFYS TGGDGGSGVS  60
GSDLGDGSSK SSKSASVNSS VEESKKSNFN LEAFEGFPKD FFDKKDSAAA EALGSSPTHD  120
VSAGSGEPLL SLKLGKRMYF EDVCAGNNHE TSSLSVISTS MATKTKRFKS AAQSAFASHC  180
QVEGCNLDLS SAKDYHRKHR ICANHSKSPK VVVDGVELRF CQQCSRFHGL SEFDENKRSC  240
RRRLSDHNAR RRKPQTEVVR HPARLSSSLF STDAMSLSLD PGPYVYTKHA SNLTWDGSCN  300
LKFAQTKEYF PNPAKAGGTA RQLNFPNNGS PGSINVLYQD SSRLSPSKGT AAEVVNRGAE  360
ESMISFNLDA TQDIHRALSL LSTSPWVSGE GKSVPLDTNQ SYHNNSPQQG MHAMTQGVPA  420
SSEYWQTQHP SLDSQAHVSH SHSNVGNQFQ DLHQFKAPYE FGYNPNQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-251802531184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015161.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372271.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018506460.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A498HQU10.0A0A498HQU1_MALDO; Uncharacterized protein
STRINGXP_009372271.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-74squamosa promoter binding protein-like 2