PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr015154.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1152aa MW: 128470 Da PI: 6.4869

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015154.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.3	2e-55	146	261	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwlk+ e++ iL+n+ek++++ +++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+y Pbr015154.1 146 QEaQTRWLKPAEVLFILQNHEKYKIAPQPPQQPSSGSLFLFNKRILRFFRRDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEDNPSFQRRSY 243 5669******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy+e+ Pbr015154.1 244 WMLDPAYEHIVLVHYRET 261 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.707	141	267	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-76	144	262	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-48	147	260	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.2E-9	585	672	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	3.36E-19	588	672	IPR014756	Immunoglobulin E-set
Pfam	PF01833	7.7E-9	588	662	IPR002909	IPT domain
CDD	cd00102	2.14E-4	588	672	No hit	No description
CDD	cd00204	2.47E-12	774	874	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.0E-16	781	877	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.75E-16	781	877	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.884	783	875	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.0E-7	791	876	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.045	816	848	IPR002110	Ankyrin repeat
SMART	SM00015	13	933	955	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.144	934	963	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.02E-7	979	1040	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.58	988	1010	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	989	1018	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.2E-4	991	1009	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.0E-5	1011	1033	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.249	1012	1036	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.6E-5	1014	1033	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence Send to blast
MMRRQQQQQQ DQQSRVFYEL SALVLNLLRS PPTPIQFSDN STVVMPPTSS ASSLRRPPAA 60 SMAQISPAGF ASLMLGISMA LMLCGTVTFF IGFILMPWVL GLVMVLYVAG ILSSLSVLGK 120 SILCYASAPS TPRKDIPGYN INDLFQEAQT RWLKPAEVLF ILQNHEKYKI APQPPQQPSS 180 GSLFLFNKRI LRFFRRDGHN WRKKKDGRTV GEAHERLKVG NVETLNCYYA HGEDNPSFQR 240 RSYWMLDPAY EHIVLVHYRE TNEVSLQNLI INQAYLTTPF HMNSLSLPLL TTPFPPGCVN 300 FLYNDAFQGN PSTGSFVQSP VSSSFSHSPS SNTTPTVSDL HEPNQNLSSP GSLEVSSDIV 360 NKNRRGNLEN LYGMGELDSS TKFDVNQALR QLEEQLSLNE DSFEGFMDDN PNASDILDYT 420 DITNKDQFAA FNEPRYVVHD QFYSEPAQMQ GNADYSGENC KIIDHEFRDG NKESAAWKEF 480 LDPRKNSSVL KSQEKSLYKL DSNENSLSSL RSGPTAVQEH HQWLNSNENI VDTDSLPLPL 540 EVDRSKLYPY DFVSGTHPDY YTQLFEQGQI GSLDSDISLT VAQNQKFTIR EISPEWGYAT 600 EATKVVIIGS FLCDPSESAW TCMFGDVEVP AQIIQEGVIR CEAPPHLPRK VTVCVTAGNR 660 VSCSEVREFD YRVKSSSCTH NNSPPQEAAK SAEELLLLVR FVQLLMDDSS IQKRESVGSE 720 SLRKLKADDD SWSSIIEALL LGSGSSSSTI YWLLEELLKD KLQQWLSSRS HEFDQNGCSL 780 SKKEQVIIHM VAGLGFAWAL NLILNCGVNI NFRDINGWTA LHWTARFGRE KMAAVLLASG 840 ASAGAVTDPS SQDPVGKTAA SIAATNGHKG LAGYLSELSL TSHLSSLMLE ESEFSKGSAE 900 FEAELTVNSI SNRSLEGSED QVSLKNTLAA VRNAAQAAAR IQSAFRAHSF RKRQHKEAGV 960 SIDDYGISSD DIQGLSALSK LTFRNPRDYN SAAISIQKKY RGYKSRKDFL TLRQKVVKIQ 1020 AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLRGFR QETKSRDSED EDILKVFRKQ 1080 KVNVAVDEAV SRVLSMVESP EARQQYHRML TRHHQAKAEL GGTSGEGAEA DAPNSGGDNL 1140 NVDDTDMYLF T*

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence Send to blast

MMRRQQQQQQ DQQSRVFYEL SALVLNLLRS PPTPIQFSDN STVVMPPTSS ASSLRRPPAA  60
SMAQISPAGF ASLMLGISMA LMLCGTVTFF IGFILMPWVL GLVMVLYVAG ILSSLSVLGK  120
SILCYASAPS TPRKDIPGYN INDLFQEAQT RWLKPAEVLF ILQNHEKYKI APQPPQQPSS  180
GSLFLFNKRI LRFFRRDGHN WRKKKDGRTV GEAHERLKVG NVETLNCYYA HGEDNPSFQR  240
RSYWMLDPAY EHIVLVHYRE TNEVSLQNLI INQAYLTTPF HMNSLSLPLL TTPFPPGCVN  300
FLYNDAFQGN PSTGSFVQSP VSSSFSHSPS SNTTPTVSDL HEPNQNLSSP GSLEVSSDIV  360
NKNRRGNLEN LYGMGELDSS TKFDVNQALR QLEEQLSLNE DSFEGFMDDN PNASDILDYT  420
DITNKDQFAA FNEPRYVVHD QFYSEPAQMQ GNADYSGENC KIIDHEFRDG NKESAAWKEF  480
LDPRKNSSVL KSQEKSLYKL DSNENSLSSL RSGPTAVQEH HQWLNSNENI VDTDSLPLPL  540
EVDRSKLYPY DFVSGTHPDY YTQLFEQGQI GSLDSDISLT VAQNQKFTIR EISPEWGYAT  600
EATKVVIIGS FLCDPSESAW TCMFGDVEVP AQIIQEGVIR CEAPPHLPRK VTVCVTAGNR  660
VSCSEVREFD YRVKSSSCTH NNSPPQEAAK SAEELLLLVR FVQLLMDDSS IQKRESVGSE  720
SLRKLKADDD SWSSIIEALL LGSGSSSSTI YWLLEELLKD KLQQWLSSRS HEFDQNGCSL  780
SKKEQVIIHM VAGLGFAWAL NLILNCGVNI NFRDINGWTA LHWTARFGRE KMAAVLLASG  840
ASAGAVTDPS SQDPVGKTAA SIAATNGHKG LAGYLSELSL TSHLSSLMLE ESEFSKGSAE  900
FEAELTVNSI SNRSLEGSED QVSLKNTLAA VRNAAQAAAR IQSAFRAHSF RKRQHKEAGV  960
SIDDYGISSD DIQGLSALSK LTFRNPRDYN SAAISIQKKY RGYKSRKDFL TLRQKVVKIQ  1020
AYVRGYQVRK HYKVICWAVG ILDKVVLRWR RKGVGLRGFR QETKSRDSED EDILKVFRKQ  1080
KVNVAVDEAV SRVLSMVESP EARQQYHRML TRHHQAKAEL GGTSGEGAEA DAPNSGGDNL  1140
NVDDTDMYLF T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015154.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372262.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A251R1J9	0.0	A0A251R1J9_PRUPE; Uncharacterized protein
STRING	XP_009372261.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]