PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015153.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28457.1 Da    PI: 7.8937
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015153.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Pbr015153.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                 79***********************************************96 PP
2K-box86.94.1e-2984173998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + ea + s+qqe+ kLk+  e Lqr+qR+llGedL+ Ls keL++Le+qL+ slk+iRs++++ +l+++ +lq+ e+ l+e+nk+L+++l
  Pbr015153.1  84 TREALELSSQQEYLKLKAHFEALQRNQRNLLGEDLGHLSSKELESLERQLDISLKQIRSTRTQCMLDKLTDLQRNEHVLNEANKTLKQRL 173
                  556666789******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-34280IPR002100Transcription factor, MADS-box
CDDcd002654.64E-45276No hitNo description
PRINTSPR004049.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.99789180IPR002487Transcription factor, K-box
PfamPF014863.8E-2491173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLDRY QKCNYGAPET NVSTREALEL SSQQEYLKLK AHFEALQRNQ RNLLGEDLGH  120
LSSKELESLE RQLDISLKQI RSTRTQCMLD KLTDLQRNEH VLNEANKTLK QRLFEGYHVN  180
SLQLNANADE YGHQQAADEY GRQQAQAAQG DGFFHPLDCE PTLQIGYQND PISVVTAGPS  240
VSNYMGGWLP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-42751761104Developmental protein SEPALLATA 3
4ox0_B2e-42751761104Developmental protein SEPALLATA 3
4ox0_C2e-42751761104Developmental protein SEPALLATA 3
4ox0_D2e-42751761104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658000.0AB265800.1 Pyrus x bretschneideri PbMADS2 mRNA for transcription factor MADS, complete cds.
GenBankAB7451150.0AB745115.1 Pyrus pyrifolia MADS-box 12 mRNA for transcription factor, complete cds, cultivar: Kosui, clone: PpMADS12-1.
GenBankKP1640000.0KP164000.1 Pyrus pyrifolia clone PpSEP3 SEP3-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372256.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ8LLR01e-154MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A498HJG01e-174A0A498HJG0_MALDO; Uncharacterized protein
STRINGXP_009372255.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-123MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]