PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SBP | ||||||||
Protein Properties | Length: 312aa MW: 35195.2 Da PI: 9.7727 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.4 | 1.1e-39 | 41 | 117 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+++v+++g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+ Pbr015152.1 41 CLVDGCNSDLSKCRDYHRRHKVCELHSKTSKVTIKGQERRFCQQCSRFHSLVEFDEGKRSCRRRLDGHNKRRRKRQS 117 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-32 | 34 | 102 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.496 | 38 | 115 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.32E-37 | 39 | 120 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-29 | 41 | 114 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEDGSRGKLK DPGVSMRKPS SSTTSLKRPR QPNNETKIAA CLVDGCNSDL SKCRDYHRRH 60 KVCELHSKTS KVTIKGQERR FCQQCSRFHS LVEFDEGKRS CRRRLDGHNK RRRKRQSESM 120 STNLGRFLSN YQGTRFLSFG NPQMCAANAV MNSPWGYALK PENDSVLLDN HSQLNETRRS 180 SYTYREKQIP FVQGFEYAHS EASVYQPFTN ANFAQGNSSN SHRMFANGLY RDRESNCALS 240 LLSWTRATQE EIGLSHTAQS SSVCPAQSMI PRIHYNNVGV QDEAAISNLV SDGNSIGNLH 300 CQGKFQNSNY S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-28 | 38 | 114 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015152.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372254.1 | 0.0 | PREDICTED: teosinte glume architecture 1-like | ||||
TrEMBL | A0A498HJD1 | 0.0 | A0A498HJD1_MALDO; Uncharacterized protein | ||||
STRING | XP_009372254.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-47 | SBP family protein |