PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015117.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 730aa    MW: 83164.4 Da    PI: 6.6875
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015117.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.22.2e-3182169291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGFs+r+s  ++s+r+g+i++r+ vCs+eg+r++  ++  +++r+r++tr+gCka+++vkk+++g+w v+kl++eHnHel+p
  Pbr015117.1  82 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRNGGEN--RSKRQRTVTRVGCKAQMTVKKQTSGRWAVSKLVKEHNHELVP 169
                  9*****************************************9988..999*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2882169IPR004330FAR1 DNA binding domain
PfamPF105514.3E-29290380IPR018289MULE transposase domain
PROSITE profilePS5096610.682574606IPR007527Zinc finger, SWIM-type
PfamPF044347.5E-10576604IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-7581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MDSEPLNIDS DNQVAEFGEE DDAATALHLQ HTDHSYDIFD DHLVQPSNSP RSRDDFPNGD  60
GDPSLEPYEG MEFDSEQASR IFYNSYARRV GFSTRVSVYQ RSRRDGSIIC RQIVCSREGF  120
RRNGGENRSK RQRTVTRVGC KAQMTVKKQT SGRWAVSKLV KEHNHELVPP DRVHCLRSHR  180
HVSGPARSLI DTLQAAGMGP SGVMSVLIKE SGGINNVGFT KVDCQNYMSS SRQRTLGSGG  240
QVVFDYLKRM QVEDPDFFCA VQGDFENSTG NIFWADANSR MNYDYFGDTV TFDTTYRTNR  300
YRVPFAPFTG WNHHGQPVLF GCALLLNESE SSFVWLFQTW LAAMSSRYPV SLTTDQDRII  360
RAAVVHVFPR TRHRFCKWNV FREAQEKLSD IYHSHPTFEA ELLKCINVTE TIEEFESCWE  420
SLVQRYDLGD NEWLQSIYDA RQQWVPVFIQ DTFFGEMSAT QGSDNINSYF DGYINASTSI  480
QVLIKQYEKA IAIRHEKEVK ADYDTMNSSP ILRTPSPMEK QAAKLYTRII FMKFQEELVE  540
TLAYPATVVD DTGSETMYRV AKFGEDHKMH SVKFNVFEKK ARCSCQLFEF SGIICRHILA  600
VFRVTNVLTL PSHYILKRWT KNARSGVVWD ENTLGLPNDS QDSTAARYDN LRREAIKYVE  660
EGAESVHVYN VAMDALHEAA NEVAAAKKHG IAIAQNTPVN CSQKLQSCTM VFSRKLSKAK  720
SEMISEIPF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015117.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372650.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLM5WTJ30.0M5WTJ3_PRUPE; Uncharacterized protein
STRINGXP_009372650.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]